Analysis of interatomic Contacts of Structural Units in PDB entry:
3WPD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3WPD entry

There are 2 chains in PDB entry 3WPD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 28LEU 810
C
 C 1 G 10
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 3WPD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
61 65Right-handed 310
Helix 2
2
A
100 104Right-handed 310
Helix 3
3
A
236 241Right-handed 310
Helix 4
4
A
300 304Right-handed 310
Helix 5
5
A
322 327Right-handed alpha
Helix 6
6
A
357 363Right-handed 310
Helix 7
7
A
384 388Right-handed 310
Helix 8
8
A
407 412Right-handed 310
Helix 9
9
A
489 493Right-handed 310
Helix 10
10
A
568 572Right-handed 310
Helix 11
11
A
609 616Right-handed alpha
Helix 12
12
A
644 650Right-handed alpha
Helix 13
13
A
669 676Right-handed 310
Helix 14
14
A
741 745Right-handed 310
Helix 15
15
A
769 776Right-handed alpha
Helix 16
16
A
777 781Right-handed 310
Helix 17
17
A
793 797Right-handed 310
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There are 6 sheets in PDB entry 3WPD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 27 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 44first strand
Strand 2
A
67 69parallel
Strand 3
A
91 93parallel
Strand 4
A
127 129parallel
Strand 5
A
147 149parallel
Strand 6
A
171 173parallel
Strand 7
A
203 205parallel
Strand 8
A
224 226parallel
Strand 9
A
248 250parallel
Strand 10
A
288 290parallel
Strand 11
A
312 314parallel
Strand 12
A
338 340parallel
Strand 13
A
368 370parallel
Strand 14
A
395 397parallel
Strand 15
A
419 421parallel
Strand 16
A
476 478parallel
Strand 17
A
500 502parallel
Strand 18
A
525 527parallel
Strand 19
A
549 551parallel
Strand 20
A
579 581parallel
Strand 21
A
602 604parallel
Strand 22
A
632 634parallel
Strand 23
A
657 659parallel
Strand 24
A
681 683parallel
Strand 25
A
705 707parallel
Strand 26
A
729 731parallel
Strand 27
A
754 756parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 78first strand
Strand 2
A
113 114parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 158first strand
Strand 2
A
189 190parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
234 235first strand
Strand 2
A
274 275parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
691 692first strand
Strand 2
A
715 716parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
762 763first strand
Strand 2
A
790 792parallel
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