Analysis of interatomic Contacts of Structural Units in PDB entry:
3WPE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3WPE entry

There are 2 chains in PDB entry 3WPE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 29GLY 792
C
 G 4 T 9
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 3WPE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
60 64Right-handed 310
Helix 2
2
A
159 163Right-handed 310
Helix 3
3
A
235 240Right-handed 310
Helix 4
4
A
275 280Right-handed 310
Helix 5
5
A
299 304Right-handed alpha
Helix 6
6
A
321 326Right-handed alpha
Helix 7
7
A
356 361Right-handed 310
Helix 8
8
A
383 389Right-handed 310
Helix 9
9
A
407 413Right-handed 310
Helix 10
10
A
486 491Right-handed 310
Helix 11
11
A
553 558Right-handed alpha
Helix 12
12
A
566 572Right-handed 310
Helix 13
13
A
607 612Right-handed alpha
Helix 14
14
A
642 648Right-handed alpha
Helix 15
15
A
668 674Right-handed 310
Helix 16
16
A
739 743Right-handed 310
Helix 17
17
A
768 775Right-handed alpha
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There are 6 sheets in PDB entry 3WPE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 28 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 36first strand
Strand 2
A
41 43anti-parallel
Strand 3
A
66 68parallel
Strand 4
A
90 92parallel
Strand 5
A
126 128parallel
Strand 6
A
146 148parallel
Strand 7
A
170 172parallel
Strand 8
A
202 204parallel
Strand 9
A
223 225parallel
Strand 10
A
247 249parallel
Strand 11
A
287 289parallel
Strand 12
A
311 313parallel
Strand 13
A
337 339parallel
Strand 14
A
367 369parallel
Strand 15
A
394 396parallel
Strand 16
A
418 420parallel
Strand 17
A
474 476parallel
Strand 18
A
498 500parallel
Strand 19
A
523 525parallel
Strand 20
A
547 549parallel
Strand 21
A
577 579parallel
Strand 22
A
600 602parallel
Strand 23
A
630 632parallel
Strand 24
A
655 657parallel
Strand 25
A
679 681parallel
Strand 26
A
703 705parallel
Strand 27
A
727 729parallel
Strand 28
A
752 754parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 77first strand
Strand 2
A
112 113parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 157first strand
Strand 2
A
188 189parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
377 378first strand
Strand 2
A
404 405parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
689 690first strand
Strand 2
A
713 714parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
760 761first strand
Strand 2
A
788 790parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il