Analysis of interatomic Contacts of Structural Units in PDB entry:
3WPU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3WPU entry

There are 2 chains in PDB entry 3WPU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 39TYR 576
B
 GLY 39TYR 576
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 3WPU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
65 75Right-handed alpha
Helix 2
2
A
88 92Right-handed 310
Helix 3
3
A
142 150Right-handed 310
Helix 4
4
A
162 166Right-handed 310
Helix 5
5
A
182 188Right-handed 310
Helix 6
6
A
313 318Right-handed alpha
Helix 7
7
A
328 334Right-handed alpha
Helix 8
8
A
336 340Right-handed 310
Helix 9
9
A
392 396Right-handed 310
Helix 10
10
A
421 425Right-handed alpha
Helix 11
11
A
496 499Right-handed 310
Helix 12
12
A
537 549Right-handed alpha
Helix 13
13
A
549 557Right-handed alpha
Helix 14
14
A
562 576Right-handed alpha
Helix 15
15
B
65 70Right-handed alpha
Helix 16
16
B
70 76Right-handed alpha
Helix 17
17
B
88 92Right-handed 310
Helix 18
18
B
142 150Right-handed 310
Helix 19
19
B
162 166Right-handed 310
Helix 20
20
B
182 188Right-handed 310
Helix 21
21
B
313 318Right-handed alpha
Helix 22
22
B
328 335Right-handed alpha
Helix 23
23
B
336 340Right-handed 310
Helix 24
24
B
392 396Right-handed 310
Helix 25
25
B
421 425Right-handed alpha
Helix 26
26
B
496 499Right-handed 310
Helix 27
27
B
538 549Right-handed alpha
Helix 28
28
B
549 557Right-handed alpha
Helix 29
29
B
562 576Right-handed alpha
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There are 14 sheets in PDB entry 3WPU. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 63first strand
Strand 2
A
357 365parallel
Strand 3
A
342 349anti-parallel
Strand 4
A
296 302anti-parallel
Strand 5
A
281 286anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 177first strand
Strand 2
A
151 158anti-parallel
Strand 3
A
129 138anti-parallel
Strand 4
A
108 117anti-parallel
Strand 5
A
195 205parallel
Strand 6
A
210 220anti-parallel
Strand 7
A
233 246anti-parallel
Strand 8
A
249 262anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 177first strand
Strand 2
A
151 158anti-parallel
Strand 3
A
129 138anti-parallel
Strand 4
A
124 126anti-parallel
Strand 5
A
524 529parallel
Strand 6
A
532 536anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
374 381first strand
Strand 2
A
384 391anti-parallel
Strand 3
A
405 411anti-parallel
Strand 4
A
419 420anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
374 381first strand
Strand 2
A
384 391anti-parallel
Strand 3
A
405 411anti-parallel
Strand 4
A
427 430anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
457 461first strand
Strand 2
A
466 470anti-parallel
Strand 3
A
490 494anti-parallel
Strand 4
A
503 505anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
473 476first strand
Strand 2
A
479 482anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 63first strand
Strand 2
B
357 365parallel
Strand 3
B
342 349anti-parallel
Strand 4
B
296 302anti-parallel
Strand 5
B
281 286anti-parallel
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There are 8 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
173 177first strand
Strand 2
B
151 158anti-parallel
Strand 3
B
129 138anti-parallel
Strand 4
B
108 117anti-parallel
Strand 5
B
195 205parallel
Strand 6
B
210 220anti-parallel
Strand 7
B
233 246anti-parallel
Strand 8
B
249 262anti-parallel
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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
173 177first strand
Strand 2
B
151 158anti-parallel
Strand 3
B
129 138anti-parallel
Strand 4
B
124 126anti-parallel
Strand 5
B
524 529parallel
Strand 6
B
532 537anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
374 381first strand
Strand 2
B
384 391anti-parallel
Strand 3
B
405 411anti-parallel
Strand 4
B
419 420anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
374 381first strand
Strand 2
B
384 391anti-parallel
Strand 3
B
405 411anti-parallel
Strand 4
B
427 430anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
457 462first strand
Strand 2
B
466 470anti-parallel
Strand 3
B
490 494anti-parallel
Strand 4
B
503 505anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
473 476first strand
Strand 2
B
479 482anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il