Analysis of interatomic Contacts of Structural Units in PDB entry:
3WPV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3WPV entry

There are 3 chains in PDB entry 3WPV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 40	GLY 577
B	LEU 40	GLY 577
C	LEU 40	GLY 577

There are 42 helices in PDB entry 3WPV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	65	76	Right-handed alpha
Helix 2	2	A	88	92	Right-handed 310
Helix 3	3	A	142	150	Right-handed 310
Helix 4	4	A	162	166	Right-handed 310
Helix 5	5	A	183	188	Right-handed 310
Helix 6	6	A	306	310	Right-handed 310
Helix 7	7	A	313	318	Right-handed alpha
Helix 8	8	A	328	335	Right-handed alpha
Helix 9	9	A	336	340	Right-handed 310
Helix 10	10	A	421	425	Right-handed alpha
Helix 11	11	A	496	499	Right-handed 310
Helix 12	12	A	537	549	Right-handed alpha
Helix 13	13	A	549	557	Right-handed alpha
Helix 14	14	A	562	577	Right-handed alpha
Helix 15	15	B	65	76	Right-handed alpha
Helix 16	16	B	88	92	Right-handed 310
Helix 17	17	B	142	150	Right-handed 310
Helix 18	18	B	162	166	Right-handed 310
Helix 19	19	B	183	188	Right-handed 310
Helix 20	20	B	313	318	Right-handed alpha
Helix 21	21	B	328	335	Right-handed alpha
Helix 22	22	B	336	340	Right-handed 310
Helix 23	23	B	421	425	Right-handed alpha
Helix 24	24	B	496	499	Right-handed 310
Helix 25	25	B	537	548	Right-handed alpha
Helix 26	26	B	549	558	Right-handed alpha
Helix 27	27	B	562	577	Right-handed alpha
Helix 28	28	C	65	70	Right-handed alpha
Helix 29	29	C	70	76	Right-handed alpha
Helix 30	30	C	88	92	Right-handed 310
Helix 31	31	C	142	150	Right-handed 310
Helix 32	32	C	162	166	Right-handed 310
Helix 33	33	C	183	188	Right-handed 310
Helix 34	34	C	306	310	Right-handed 310
Helix 35	35	C	313	318	Right-handed alpha
Helix 36	36	C	328	335	Right-handed alpha
Helix 37	37	C	336	340	Right-handed 310
Helix 38	38	C	421	425	Right-handed alpha
Helix 39	39	C	496	499	Right-handed 310
Helix 40	40	C	537	549	Right-handed alpha
Helix 41	41	C	551	557	Right-handed alpha
Helix 42	42	C	562	576	Right-handed alpha

There are 21 sheets in PDB entry 3WPV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	63	first strand
Strand 2	A	357	365	parallel
Strand 3	A	342	349	anti-parallel
Strand 4	A	296	302	anti-parallel
Strand 5	A	281	286	anti-parallel

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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	173	177	first strand
Strand 2	A	151	158	anti-parallel
Strand 3	A	129	138	anti-parallel
Strand 4	A	108	117	anti-parallel
Strand 5	A	195	205	parallel
Strand 6	A	210	220	anti-parallel
Strand 7	A	233	246	anti-parallel
Strand 8	A	249	262	anti-parallel

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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	173	177	first strand
Strand 2	A	151	158	anti-parallel
Strand 3	A	129	138	anti-parallel
Strand 4	A	124	126	anti-parallel
Strand 5	A	524	528	parallel
Strand 6	A	533	535	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	374	381	first strand
Strand 2	A	384	391	anti-parallel
Strand 3	A	405	411	anti-parallel
Strand 4	A	419	420	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	374	381	first strand
Strand 2	A	384	391	anti-parallel
Strand 3	A	405	411	anti-parallel
Strand 4	A	427	430	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	457	462	first strand
Strand 2	A	466	470	anti-parallel
Strand 3	A	490	494	anti-parallel
Strand 4	A	503	505	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	473	475	first strand
Strand 2	A	480	482	anti-parallel

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	62	63	first strand
Strand 2	B	357	365	parallel
Strand 3	B	342	349	anti-parallel
Strand 4	B	296	302	anti-parallel
Strand 5	B	281	286	anti-parallel

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There are 8 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	173	177	first strand
Strand 2	B	151	158	anti-parallel
Strand 3	B	129	138	anti-parallel
Strand 4	B	108	117	anti-parallel
Strand 5	B	195	205	parallel
Strand 6	B	210	220	anti-parallel
Strand 7	B	233	246	anti-parallel
Strand 8	B	249	262	anti-parallel

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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	173	177	first strand
Strand 2	B	151	158	anti-parallel
Strand 3	B	129	138	anti-parallel
Strand 4	B	124	126	anti-parallel
Strand 5	B	524	528	parallel
Strand 6	B	533	536	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	374	381	first strand
Strand 2	B	384	391	anti-parallel
Strand 3	B	405	411	anti-parallel
Strand 4	B	419	420	anti-parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	374	381	first strand
Strand 2	B	384	391	anti-parallel
Strand 3	B	405	411	anti-parallel
Strand 4	B	427	430	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	457	462	first strand
Strand 2	B	466	470	anti-parallel
Strand 3	B	490	494	anti-parallel
Strand 4	B	503	505	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	473	476	first strand
Strand 2	B	479	482	anti-parallel

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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	62	63	first strand
Strand 2	C	357	365	parallel
Strand 3	C	342	349	anti-parallel
Strand 4	C	296	302	anti-parallel
Strand 5	C	281	286	anti-parallel

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There are 8 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	173	177	first strand
Strand 2	C	151	158	anti-parallel
Strand 3	C	129	138	anti-parallel
Strand 4	C	108	117	anti-parallel
Strand 5	C	195	205	parallel
Strand 6	C	210	220	anti-parallel
Strand 7	C	233	246	anti-parallel
Strand 8	C	249	262	anti-parallel

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There are 6 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	173	177	first strand
Strand 2	C	151	158	anti-parallel
Strand 3	C	129	138	anti-parallel
Strand 4	C	124	126	anti-parallel
Strand 5	C	524	528	parallel
Strand 6	C	533	536	anti-parallel

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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	374	381	first strand
Strand 2	C	384	391	anti-parallel
Strand 3	C	405	411	anti-parallel
Strand 4	C	419	420	anti-parallel

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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	374	381	first strand
Strand 2	C	384	391	anti-parallel
Strand 3	C	405	411	anti-parallel
Strand 4	C	427	430	anti-parallel

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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	457	461	first strand
Strand 2	C	466	470	anti-parallel
Strand 3	C	490	494	anti-parallel
Strand 4	C	503	505	anti-parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	473	475	first strand
Strand 2	C	480	482	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3WPV

Analysis of interatomic Contacts of Structural Units in PDB entry:
3WPV