Analysis of interatomic Contacts of Structural Units in PDB entry:
3WQ4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3WQ4 entry

There are 2 chains in PDB entry 3WQ4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 33LYS 507
B
 SER 33LEU 506
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 3WQ4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
35 39Right-handed 310
Helix 2
2
A
50 55Right-handed alpha
Helix 3
3
A
66 75Right-handed alpha
Helix 4
4
A
76 83Right-handed 310
Helix 5
5
A
90 106Right-handed alpha
Helix 6
6
A
115 120Right-handed alpha
Helix 7
7
A
124 128Right-handed 310
Helix 8
8
A
130 147Right-handed alpha
Helix 9
9
A
161 169Right-handed alpha
Helix 10
10
A
170 174Right-handed 310
Helix 11
11
A
175 192Right-handed alpha
Helix 12
12
A
203 213Right-handed alpha
Helix 13
13
A
223 227Right-handed 310
Helix 14
14
A
236 260Right-handed alpha
Helix 15
15
A
260 265Right-handed alpha
Helix 16
16
A
283 298Right-handed alpha
Helix 17
17
A
298 308Right-handed alpha
Helix 18
18
A
311 319Right-handed alpha
Helix 19
19
A
320 322Right-handed 310
Helix 20
20
A
326 334Right-handed alpha
Helix 21
21
A
362 367Right-handed alpha
Helix 22
22
A
393 407Right-handed alpha
Helix 23
23
A
426 432Right-handed alpha
Helix 24
24
A
433 453Right-handed alpha
Helix 25
25
A
470 474Right-handed 310
Helix 26
26
A
495 505Right-handed alpha
Helix 27
27
B
35 39Right-handed 310
Helix 28
28
B
50 55Right-handed alpha
Helix 29
29
B
66 75Right-handed alpha
Helix 30
30
B
76 83Right-handed 310
Helix 31
31
B
90 106Right-handed alpha
Helix 32
32
B
115 120Right-handed alpha
Helix 33
33
B
124 128Right-handed 310
Helix 34
34
B
130 147Right-handed alpha
Helix 35
35
B
161 169Right-handed alpha
Helix 36
36
B
170 174Right-handed 310
Helix 37
37
B
175 192Right-handed alpha
Helix 38
38
B
203 213Right-handed alpha
Helix 39
39
B
223 227Right-handed 310
Helix 40
40
B
236 260Right-handed alpha
Helix 41
41
B
260 265Right-handed alpha
Helix 42
42
B
283 298Right-handed alpha
Helix 43
43
B
298 308Right-handed alpha
Helix 44
44
B
311 319Right-handed alpha
Helix 45
45
B
320 322Right-handed 310
Helix 46
46
B
326 334Right-handed alpha
Helix 47
47
B
362 367Right-handed alpha
Helix 48
48
B
393 407Right-handed alpha
Helix 49
49
B
426 432Right-handed alpha
Helix 50
50
B
433 453Right-handed alpha
Helix 51
51
B
470 474Right-handed 310
Helix 52
52
B
495 505Right-handed alpha
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There are 11 sheets in PDB entry 3WQ4. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 48first strand
Strand 2
A
109 113parallel
Strand 3
A
150 156parallel
Strand 4
A
197 202parallel
Strand 5
A
267 273parallel
Strand 6
A
339 343parallel
Strand 7
A
411 417parallel
Strand 8
A
456 462parallel
Strand 9
A
44 48parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
276 279first strand
Strand 2
A
347 352parallel
Strand 3
A
369 372anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
374 375first strand
Strand 2
A
378 379anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
382 383first strand
Strand 2
A
390 391anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
421 422first strand
Strand 2
A
477 478anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
482 484first strand
Strand 2
A
492 494anti-parallel
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There are 9 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 48first strand
Strand 2
B
109 113parallel
Strand 3
B
150 156parallel
Strand 4
B
197 202parallel
Strand 5
B
267 273parallel
Strand 6
B
339 343parallel
Strand 7
B
412 416parallel
Strand 8
B
457 462parallel
Strand 9
B
44 48parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
276 279first strand
Strand 2
B
347 352parallel
Strand 3
B
369 372anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
374 375first strand
Strand 2
B
378 379anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
421 422first strand
Strand 2
B
477 478anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
482 484first strand
Strand 2
B
492 494anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il