Analysis of interatomic Contacts of Structural Units in PDB entry:
3WQQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3WQQ entry

There are 2 chains in PDB entry 3WQQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 77ASN 486
B
 PRO 77ASN 486
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 3WQQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
87 102Right-handed alpha
Helix 2
2
A
117 129Right-handed alpha
Helix 3
3
A
140 150Right-handed alpha
Helix 4
4
A
161 170Right-handed alpha
Helix 5
5
A
183 185Right-handed 310
Helix 6
6
A
186 196Right-handed alpha
Helix 7
7
A
204 222Right-handed alpha
Helix 8
8
A
231 240Right-handed alpha
Helix 9
9
A
242 248Right-handed alpha
Helix 10
10
A
255 260Right-handed alpha
Helix 11
11
A
278 283Right-handed alpha
Helix 12
12
A
286 292Right-handed alpha
Helix 13
13
A
299 308Right-handed alpha
Helix 14
14
A
309 324Right-handed alpha
Helix 15
15
A
326 328Right-handed 310
Helix 16
16
A
360 370Right-handed alpha
Helix 17
17
A
382 387Right-handed alpha
Helix 18
18
A
400 412Right-handed alpha
Helix 19
19
A
414 432Right-handed alpha
Helix 20
20
A
436 451Right-handed alpha
Helix 21
21
A
459 486Right-handed alpha
Helix 22
22
B
87 102Right-handed alpha
Helix 23
23
B
117 129Right-handed alpha
Helix 24
24
B
137 139Right-handed 310
Helix 25
25
B
140 149Right-handed alpha
Helix 26
26
B
161 171Right-handed alpha
Helix 27
27
B
183 185Right-handed 310
Helix 28
28
B
186 196Right-handed alpha
Helix 29
29
B
204 222Right-handed alpha
Helix 30
30
B
231 241Right-handed alpha
Helix 31
31
B
242 247Right-handed alpha
Helix 32
32
B
255 260Right-handed alpha
Helix 33
33
B
278 285Right-handed alpha
Helix 34
34
B
286 293Right-handed alpha
Helix 35
35
B
299 309Right-handed alpha
Helix 36
36
B
309 324Right-handed alpha
Helix 37
37
B
326 328Right-handed 310
Helix 38
38
B
360 370Right-handed alpha
Helix 39
39
B
382 387Right-handed alpha
Helix 40
40
B
399 412Right-handed alpha
Helix 41
41
B
414 432Right-handed alpha
Helix 42
42
B
436 451Right-handed alpha
Helix 43
43
B
459 484Right-handed alpha
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There are 4 sheets in PDB entry 3WQQ. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 160first strand
Strand 2
A
132 135parallel
Strand 3
A
107 114parallel
Strand 4
A
78 83parallel
Strand 5
A
176 179parallel
Strand 6
A
199 202parallel
Strand 7
A
226 229parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
330 334first strand
Strand 2
A
262 269parallel
Strand 3
A
340 346anti-parallel
Strand 4
A
351 355anti-parallel
Strand 5
B
351 355anti-parallel
Strand 6
B
340 346anti-parallel
Strand 7
B
262 269anti-parallel
Strand 8
B
330 334parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
388 390first strand
Strand 2
B
388 390anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
157 160first strand
Strand 2
B
132 135parallel
Strand 3
B
107 114parallel
Strand 4
B
78 83parallel
Strand 5
B
176 179parallel
Strand 6
B
199 202parallel
Strand 7
B
226 229parallel
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