Analysis of interatomic Contacts of Structural Units in PDB entry:
3WQY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3WQY entry

There are 2 chains in PDB entry 3WQY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 2	GLY 906
B	MET 1	PHE 349

There are 61 helices in PDB entry 3WQY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	3	8	Right-handed alpha
Helix 2	2	A	10	16	Right-handed alpha
Helix 3	3	A	61	75	Right-handed alpha
Helix 4	4	A	100	104	Right-handed 310
Helix 5	5	A	129	133	Right-handed 310
Helix 6	6	A	162	178	Right-handed alpha
Helix 7	7	A	180	182	Right-handed 310
Helix 8	8	A	247	256	Right-handed alpha
Helix 9	9	A	259	265	Right-handed alpha
Helix 10	10	A	265	275	Right-handed alpha
Helix 11	11	A	284	297	Right-handed alpha
Helix 12	12	A	297	302	Right-handed alpha
Helix 13	13	A	306	321	Right-handed alpha
Helix 14	14	A	323	353	Right-handed alpha
Helix 15	15	A	361	381	Right-handed alpha
Helix 16	16	A	385	398	Right-handed alpha
Helix 17	17	A	404	438	Right-handed alpha
Helix 18	18	A	441	451	Right-handed alpha
Helix 19	19	A	455	467	Right-handed alpha
Helix 20	20	A	476	482	Right-handed alpha
Helix 21	21	A	589	615	Right-handed alpha
Helix 22	22	A	641	659	Right-handed alpha
Helix 23	23	A	669	677	Right-handed alpha
Helix 24	24	A	678	682	Right-handed 310
Helix 25	25	A	737	758	Right-handed alpha
Helix 26	26	A	761	763	Right-handed 310
Helix 27	27	A	764	801	Right-handed alpha
Helix 28	28	A	818	832	Right-handed alpha
Helix 29	29	A	857	870	Right-handed alpha
Helix 30	30	A	889	904	Right-handed alpha
Helix 31	31	B	3	9	Right-handed alpha
Helix 32	32	B	10	15	Right-handed alpha
Helix 33	33	B	61	76	Right-handed alpha
Helix 34	34	B	100	104	Right-handed 310
Helix 35	35	B	129	133	Right-handed 310
Helix 36	36	B	162	177	Right-handed alpha
Helix 37	37	B	247	256	Right-handed alpha
Helix 38	38	B	260	265	Right-handed alpha
Helix 39	39	B	265	275	Right-handed alpha
Helix 40	40	B	284	297	Right-handed alpha
Helix 41	41	B	297	302	Right-handed alpha
Helix 42	42	B	307	321	Right-handed alpha
Helix 43	43	B	323	353	Right-handed alpha
Helix 44	44	B	361	381	Right-handed alpha
Helix 45	45	B	385	398	Right-handed alpha
Helix 46	46	B	404	425	Right-handed alpha
Helix 47	47	B	426	438	Right-handed alpha
Helix 48	48	B	441	453	Right-handed alpha
Helix 49	49	B	455	466	Right-handed alpha
Helix 50	50	B	475	486	Right-handed alpha
Helix 51	51	B	589	614	Right-handed alpha
Helix 52	52	B	641	659	Right-handed alpha
Helix 53	53	B	669	677	Right-handed alpha
Helix 54	54	B	678	682	Right-handed 310
Helix 55	55	B	710	715	Right-handed 310
Helix 56	56	B	737	758	Right-handed alpha
Helix 57	57	B	761	763	Right-handed 310
Helix 58	58	B	764	802	Right-handed alpha
Helix 59	59	B	818	832	Right-handed alpha
Helix 60	60	B	857	870	Right-handed alpha
Helix 61	61	B	889	904	Right-handed alpha

There are 17 sheets in PDB entry 3WQY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	19	22	first strand
Strand 2	A	29	32	anti-parallel
Strand 3	A	184	192	anti-parallel
Strand 4	A	196	205	anti-parallel
Strand 5	A	208	220	anti-parallel
Strand 6	A	231	246	anti-parallel
Strand 7	A	144	154	anti-parallel
Strand 8	A	120	127	anti-parallel
Strand 9	A	79	80	parallel

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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	19	22	first strand
Strand 2	A	29	32	anti-parallel
Strand 3	A	184	192	anti-parallel
Strand 4	A	196	205	anti-parallel
Strand 5	A	208	220	anti-parallel
Strand 6	A	231	246	anti-parallel
Strand 7	A	226	228	anti-parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	561	565	first strand
Strand 2	A	568	572	anti-parallel
Strand 3	A	528	531	anti-parallel
Strand 4	A	519	525	anti-parallel
Strand 5	A	583	584	anti-parallel

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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	556	559	first strand
Strand 2	A	548	551	anti-parallel
Strand 3	A	586	588	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	620	626	first strand
Strand 2	A	629	634	anti-parallel
Strand 3	A	729	736	anti-parallel
Strand 4	A	717	726	anti-parallel

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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	663	668	first strand
Strand 2	A	690	696	anti-parallel
Strand 3	A	699	702	anti-parallel

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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	803	804	first strand
Strand 2	A	809	815	anti-parallel
Strand 3	A	835	841	parallel
Strand 4	A	846	852	anti-parallel
Strand 5	A	879	884	anti-parallel
Strand 6	A	871	875	anti-parallel

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There are 9 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	19	23	first strand
Strand 2	B	28	32	anti-parallel
Strand 3	B	185	193	anti-parallel
Strand 4	B	196	205	anti-parallel
Strand 5	B	208	220	anti-parallel
Strand 6	B	231	246	anti-parallel
Strand 7	B	144	154	anti-parallel
Strand 8	B	120	127	anti-parallel
Strand 9	B	79	80	parallel

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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	19	23	first strand
Strand 2	B	28	32	anti-parallel
Strand 3	B	185	193	anti-parallel
Strand 4	B	196	205	anti-parallel
Strand 5	B	208	220	anti-parallel
Strand 6	B	231	246	anti-parallel
Strand 7	B	226	228	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	439	440	first strand
Strand 2	B	469	470	parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	505	506	first strand
Strand 2	B	533	534	parallel

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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	516	520	first strand
Strand 2	B	583	588	anti-parallel
Strand 3	B	548	551	anti-parallel
Strand 4	B	556	559	anti-parallel
Strand 5	B	574	575	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	524	525	first strand
Strand 2	B	528	529	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	562	565	first strand
Strand 2	B	568	571	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	622	624	first strand
Strand 2	B	631	635	anti-parallel
Strand 3	B	729	736	anti-parallel
Strand 4	B	717	726	anti-parallel

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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	662	668	first strand
Strand 2	B	690	696	anti-parallel
Strand 3	B	699	701	anti-parallel

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There are 6 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	803	805	first strand
Strand 2	B	808	814	anti-parallel
Strand 3	B	835	840	parallel
Strand 4	B	846	852	anti-parallel
Strand 5	B	879	884	anti-parallel
Strand 6	B	873	875	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3WQY

Analysis of interatomic Contacts of Structural Units in PDB entry:
3WQY