Analysis of interatomic Contacts of Structural Units in PDB entry:
3WS5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3WS5 entry

There are 3 chains in PDB entry 3WS5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 8ILE 364
B
 GLN 8VAL 366
C
 GLN 8ASP 365
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 3WS5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 25Right-handed alpha
Helix 2
2
A
66 81Right-handed alpha
Helix 3
3
A
89 93Right-handed 310
Helix 4
4
A
94 98Right-handed 310
Helix 5
5
A
100 104Right-handed 310
Helix 6
6
A
106 112Right-handed alpha
Helix 7
7
A
128 139Right-handed alpha
Helix 8
8
A
152 167Right-handed alpha
Helix 9
9
A
170 179Right-handed alpha
Helix 10
10
A
179 184Right-handed alpha
Helix 11
11
A
193 200Right-handed 310
Helix 12
12
A
218 223Right-handed alpha
Helix 13
13
A
228 240Right-handed alpha
Helix 14
14
A
246 256Right-handed alpha
Helix 15
15
A
280 288Right-handed alpha
Helix 16
16
A
289 294Right-handed alpha
Helix 17
17
A
331 334Right-handed 310
Helix 18
18
A
346 361Right-handed alpha
Helix 19
19
B
8 24Right-handed alpha
Helix 20
20
B
66 81Right-handed alpha
Helix 21
21
B
89 93Right-handed 310
Helix 22
22
B
94 98Right-handed 310
Helix 23
23
B
100 104Right-handed 310
Helix 24
24
B
106 112Right-handed alpha
Helix 25
25
B
128 139Right-handed alpha
Helix 26
26
B
152 167Right-handed alpha
Helix 27
27
B
170 179Right-handed alpha
Helix 28
28
B
179 184Right-handed alpha
Helix 29
29
B
193 200Right-handed 310
Helix 30
30
B
218 224Right-handed alpha
Helix 31
31
B
228 240Right-handed alpha
Helix 32
32
B
246 256Right-handed alpha
Helix 33
33
B
280 288Right-handed alpha
Helix 34
34
B
289 294Right-handed alpha
Helix 35
35
B
331 334Right-handed 310
Helix 36
36
B
346 361Right-handed alpha
Helix 37
37
C
9 25Right-handed alpha
Helix 38
38
C
66 81Right-handed alpha
Helix 39
39
C
89 93Right-handed 310
Helix 40
40
C
94 98Right-handed 310
Helix 41
41
C
100 104Right-handed 310
Helix 42
42
C
106 112Right-handed alpha
Helix 43
43
C
128 139Right-handed alpha
Helix 44
44
C
152 167Right-handed alpha
Helix 45
45
C
170 179Right-handed alpha
Helix 46
46
C
179 184Right-handed alpha
Helix 47
47
C
193 200Right-handed 310
Helix 48
48
C
218 224Right-handed alpha
Helix 49
49
C
228 240Right-handed alpha
Helix 50
50
C
246 256Right-handed alpha
Helix 51
51
C
280 288Right-handed alpha
Helix 52
52
C
289 294Right-handed alpha
Helix 53
53
C
331 334Right-handed 310
Helix 54
54
C
346 361Right-handed alpha
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There are 12 sheets in PDB entry 3WS5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 45first strand
Strand 2
A
28 35anti-parallel
Strand 3
A
335 341anti-parallel
Strand 4
A
324 330anti-parallel
Strand 5
A
312 319anti-parallel
Strand 6
A
273 276anti-parallel
Strand 7
A
266 268anti-parallel
Strand 8
A
259 263anti-parallel
Strand 9
A
300 306anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 62first strand
Strand 2
A
226 227anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 149first strand
Strand 2
A
297 298anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 204first strand
Strand 2
A
210 211anti-parallel
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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 45first strand
Strand 2
B
28 35anti-parallel
Strand 3
B
335 341anti-parallel
Strand 4
B
324 330anti-parallel
Strand 5
B
312 319anti-parallel
Strand 6
B
273 276anti-parallel
Strand 7
B
266 268anti-parallel
Strand 8
B
261 263anti-parallel
Strand 9
B
300 301anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 62first strand
Strand 2
B
226 227anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
148 149first strand
Strand 2
B
297 298anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
203 204first strand
Strand 2
B
210 211anti-parallel
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There are 9 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
38 45first strand
Strand 2
C
28 35anti-parallel
Strand 3
C
335 341anti-parallel
Strand 4
C
324 330anti-parallel
Strand 5
C
312 319anti-parallel
Strand 6
C
273 276anti-parallel
Strand 7
C
266 268anti-parallel
Strand 8
C
261 263anti-parallel
Strand 9
C
300 301anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
61 62first strand
Strand 2
C
226 227anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
148 149first strand
Strand 2
C
297 298anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
203 204first strand
Strand 2
C
210 211anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il