Analysis of interatomic Contacts of Structural Units in PDB entry:
3WUB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3WUB entry

There is 1 chain in PDB entry 3WUB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 39ASN 351
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 3WUB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
42 49Right-handed alpha
Helix 2
2
A
59 63Right-handed 310
Helix 3
3
A
65 76Right-handed alpha
Helix 4
4
A
86 91Right-handed alpha
Helix 5
5
A
99 112Right-handed alpha
Helix 6
6
A
129 134Right-handed alpha
Helix 7
7
A
135 137Right-handed 310
Helix 8
8
A
138 154Right-handed alpha
Helix 9
9
A
177 184Right-handed alpha
Helix 10
10
A
186 199Right-handed alpha
Helix 11
11
A
215 232Right-handed alpha
Helix 12
12
A
252 262Right-handed alpha
Helix 13
13
A
281 302Right-handed alpha
Helix 14
14
A
314 318Right-handed 310
Helix 15
15
A
319 324Right-handed alpha
Helix 16
16
A
340 351Right-handed alpha
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There is 1 sheet ( A) in PDB entry 3WUB.

There are 11 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
243 245first strand
Strand 2
A
327 328first strand
Strand 3
A
237 240first strand
Strand 4
A
203 208parallel
Strand 5
A
160 165parallel
Strand 6
A
115 122parallel
Strand 7
A
78 81parallel
Strand 8
A
53 58parallel
Strand 9
A
305 310parallel
Strand 10
A
266 277parallel
Strand 11
A
327 328anti-parallel
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