Analysis of interatomic Contacts of Structural Units in PDB entry:
3WV8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3WV8 entry

There are 2 chains in PDB entry 3WV8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 10ALA 210
B
 LYS 10ALA 210
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 3WV8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
22 34Right-handed alpha
Helix 2
2
A
55 61Right-handed alpha
Helix 3
3
A
68 77Right-handed alpha
Helix 4
4
A
93 100Right-handed 310
Helix 5
5
A
114 128Right-handed alpha
Helix 6
6
A
152 154Right-handed 310
Helix 7
7
A
158 167Right-handed alpha
Helix 8
8
A
188 210Right-handed alpha
Helix 9
9
B
22 34Right-handed alpha
Helix 10
10
B
55 61Right-handed alpha
Helix 11
11
B
68 77Right-handed alpha
Helix 12
12
B
96 100Right-handed 310
Helix 13
13
B
113 128Right-handed alpha
Helix 14
14
B
152 154Right-handed 310
Helix 15
15
B
158 167Right-handed alpha
Helix 16
16
B
188 210Right-handed alpha
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There are 2 sheets in PDB entry 3WV8. Click on sheet of interest to get list of strands forming it: A, B,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 88first strand
Strand 2
A
42 46parallel
Strand 3
A
15 19parallel
Strand 4
A
104 107parallel
Strand 5
A
131 135parallel
Strand 6
A
172 176parallel
Strand 7
A
147 150anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 88first strand
Strand 2
B
42 46parallel
Strand 3
B
15 19parallel
Strand 4
B
104 107parallel
Strand 5
B
131 135parallel
Strand 6
B
172 176parallel
Strand 7
B
147 150anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il