Analysis of interatomic Contacts of Structural Units in PDB entry:
3WVA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3WVA entry

There are 2 chains in PDB entry 3WVA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1PHE 167
B
 MSE 1PHE 167
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 3WVA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 25Right-handed alpha
Helix 2
2
A
31 35Right-handed 310
Helix 3
3
A
36 44Right-handed alpha
Helix 4
4
A
56 65Right-handed alpha
Helix 5
5
A
82 102Right-handed alpha
Helix 6
6
A
142 167Right-handed alpha
Helix 7
7
B
13 24Right-handed alpha
Helix 8
8
B
31 35Right-handed 310
Helix 9
9
B
36 44Right-handed alpha
Helix 10
10
B
56 65Right-handed alpha
Helix 11
11
B
82 102Right-handed alpha
Helix 12
12
B
142 167Right-handed alpha
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There are 3 sheets in PDB entry 3WVA. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 129first strand
Strand 2
A
117 121anti-parallel
Strand 3
A
105 110anti-parallel
Strand 4
A
2 8parallel
Strand 5
A
46 53parallel
Strand 6
B
46 53anti-parallel
Strand 7
B
2 8parallel
Strand 8
B
105 110parallel
Strand 9
B
117 121anti-parallel
Strand 10
B
126 129anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 114first strand
Strand 2
A
135 136anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
113 114first strand
Strand 2
B
135 136anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il