Analysis of interatomic Contacts of Structural Units in PDB entry:
3WVF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3WVF entry

There are 2 chains in PDB entry 3WVF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 56GLN 528
B
 GLY 56GLN 528
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 3WVF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
122 126Right-handed 310
Helix 2
2
A
234 240Right-handed alpha
Helix 3
3
A
313 321Right-handed alpha
Helix 4
4
A
323 328Right-handed 310
Helix 5
5
A
333 352Right-handed alpha
Helix 6
6
A
353 369Right-handed alpha
Helix 7
7
A
369 398Right-handed alpha
Helix 8
8
A
400 416Right-handed alpha
Helix 9
9
A
423 443Right-handed alpha
Helix 10
10
A
465 477Right-handed alpha
Helix 11
11
A
493 496Right-handed 310
Helix 12
12
A
497 506Right-handed alpha
Helix 13
13
A
510 528Right-handed alpha
Helix 14
14
B
122 126Right-handed 310
Helix 15
15
B
234 240Right-handed alpha
Helix 16
16
B
313 321Right-handed alpha
Helix 17
17
B
323 328Right-handed 310
Helix 18
18
B
333 352Right-handed alpha
Helix 19
19
B
353 369Right-handed alpha
Helix 20
20
B
370 397Right-handed alpha
Helix 21
21
B
400 416Right-handed alpha
Helix 22
22
B
423 443Right-handed alpha
Helix 23
23
B
466 476Right-handed alpha
Helix 24
24
B
500 507Right-handed alpha
Helix 25
25
B
510 527Right-handed alpha
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There are 9 sheets in PDB entry 3WVF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 100first strand
Strand 2
A
78 88anti-parallel
Strand 3
A
69 73anti-parallel
Strand 4
A
60 64anti-parallel
Strand 5
A
137 139parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 115first strand
Strand 2
A
188 199anti-parallel
Strand 3
A
283 289anti-parallel
Strand 4
A
272 278anti-parallel
Strand 5
A
245 248anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 115first strand
Strand 2
A
188 199anti-parallel
Strand 3
A
293 295anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 154first strand
Strand 2
A
160 168anti-parallel
Strand 3
A
173 181anti-parallel
Strand 4
A
300 311anti-parallel
Strand 5
A
260 267anti-parallel
Strand 6
A
252 256anti-parallel
Strand 7
A
220 224anti-parallel
Strand 8
A
231 233anti-parallel
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There are 10 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
137 139first strand
Strand 2
B
60 64parallel
Strand 3
B
69 73anti-parallel
Strand 4
B
78 88anti-parallel
Strand 5
B
96 103anti-parallel
Strand 6
B
106 115anti-parallel
Strand 7
B
188 199anti-parallel
Strand 8
B
283 289anti-parallel
Strand 9
B
271 278anti-parallel
Strand 10
B
245 249anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
137 139first strand
Strand 2
B
60 64parallel
Strand 3
B
69 73anti-parallel
Strand 4
B
78 88anti-parallel
Strand 5
B
106 115anti-parallel
Strand 6
B
188 199anti-parallel
Strand 7
B
293 295anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
293 295first strand
Strand 2
B
188 199anti-parallel
Strand 3
B
283 289anti-parallel
Strand 4
B
271 278anti-parallel
Strand 5
B
245 249anti-parallel
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There are 8 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
146 154first strand
Strand 2
B
160 168anti-parallel
Strand 3
B
173 181anti-parallel
Strand 4
B
305 311anti-parallel
Strand 5
B
260 266anti-parallel
Strand 6
B
252 257anti-parallel
Strand 7
B
220 224anti-parallel
Strand 8
B
231 233anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
146 154first strand
Strand 2
B
160 168anti-parallel
Strand 3
B
173 181anti-parallel
Strand 4
B
300 303anti-parallel
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