Analysis of interatomic Contacts of Structural Units in PDB entry:
3WVI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3WVI entry

There are 12 chains in PDB entry 3WVI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2LEU 299
B
 LYS 2LEU 299
C
 LYS 2LEU 299
D
 LYS 2LEU 299
F
 G 1 C 12
E
 G 1 C 12
H
 G 1 C 12
G
 G 1 C 12
K
 G 1 C 12
L
 G 1 C 12
I
 G 1 C 12
J
 G 1 C 12
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 68 helices in PDB entry 3WVI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 14Right-handed alpha
Helix 2
2
A
19 33Right-handed alpha
Helix 3
3
A
35 46Right-handed alpha
Helix 4
4
A
57 78Right-handed alpha
Helix 5
5
A
120 125Right-handed alpha
Helix 6
6
A
125 133Right-handed alpha
Helix 7
7
A
144 148Right-handed 310
Helix 8
8
A
153 163Right-handed alpha
Helix 9
9
A
169 178Right-handed alpha
Helix 10
10
A
188 193Right-handed alpha
Helix 11
11
A
193 200Right-handed alpha
Helix 12
12
A
201 202Right-handed 310
Helix 13
13
A
203 207Right-handed 310
Helix 14
14
A
211 224Right-handed alpha
Helix 15
15
A
226 261Right-handed alpha
Helix 16
16
A
263 276Right-handed alpha
Helix 17
17
A
276 291Right-handed alpha
Helix 18
18
A
292 298Right-handed 310
Helix 19
19
B
3 14Right-handed alpha
Helix 20
20
B
19 33Right-handed alpha
Helix 21
21
B
35 46Right-handed alpha
Helix 22
22
B
57 78Right-handed alpha
Helix 23
23
B
120 125Right-handed alpha
Helix 24
24
B
125 133Right-handed alpha
Helix 25
25
B
144 148Right-handed 310
Helix 26
26
B
153 163Right-handed alpha
Helix 27
27
B
169 178Right-handed alpha
Helix 28
28
B
188 193Right-handed alpha
Helix 29
29
B
193 201Right-handed alpha
Helix 30
30
B
202 207Right-handed 310
Helix 31
31
B
211 224Right-handed alpha
Helix 32
32
B
226 261Right-handed alpha
Helix 33
33
B
263 276Right-handed alpha
Helix 34
34
B
276 293Right-handed alpha
Helix 35
35
B
294 298Right-handed 310
Helix 36
36
C
3 16Right-handed alpha
Helix 37
37
C
19 33Right-handed alpha
Helix 38
38
C
35 46Right-handed alpha
Helix 39
39
C
57 78Right-handed alpha
Helix 40
40
C
120 125Right-handed alpha
Helix 41
41
C
125 132Right-handed alpha
Helix 42
42
C
144 148Right-handed 310
Helix 43
43
C
153 163Right-handed alpha
Helix 44
44
C
169 178Right-handed alpha
Helix 45
45
C
188 193Right-handed alpha
Helix 46
46
C
193 201Right-handed alpha
Helix 47
47
C
202 207Right-handed 310
Helix 48
48
C
211 224Right-handed alpha
Helix 49
49
C
226 259Right-handed alpha
Helix 50
50
C
265 276Right-handed alpha
Helix 51
51
C
276 292Right-handed alpha
Helix 52
52
C
293 298Right-handed 310
Helix 53
53
D
3 14Right-handed alpha
Helix 54
54
D
19 33Right-handed alpha
Helix 55
55
D
35 47Right-handed alpha
Helix 56
56
D
57 78Right-handed alpha
Helix 57
57
D
120 125Right-handed alpha
Helix 58
58
D
125 133Right-handed alpha
Helix 59
59
D
144 148Right-handed 310
Helix 60
60
D
153 163Right-handed alpha
Helix 61
61
D
169 178Right-handed alpha
Helix 62
62
D
188 193Right-handed alpha
Helix 63
63
D
193 200Right-handed alpha
Helix 64
64
D
211 224Right-handed alpha
Helix 65
65
D
226 261Right-handed alpha
Helix 66
66
D
263 276Right-handed alpha
Helix 67
67
D
276 292Right-handed alpha
Helix 68
68
D
293 298Right-handed 310
Back to top of page

There are 8 sheets in PDB entry 3WVI. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 49first strand
Strand 2
A
112 113parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 84first strand
Strand 2
A
94 98anti-parallel
Strand 3
A
104 109anti-parallel
Strand 4
A
138 143parallel
Strand 5
A
164 168parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 49first strand
Strand 2
B
112 113parallel
Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
80 84first strand
Strand 2
B
94 98anti-parallel
Strand 3
B
104 109anti-parallel
Strand 4
B
138 143parallel
Strand 5
B
164 168parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
48 49first strand
Strand 2
C
112 113parallel
Back to list of sheets
Back to top of page

There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
81 84first strand
Strand 2
C
94 97anti-parallel
Strand 3
C
104 109anti-parallel
Strand 4
C
138 143parallel
Strand 5
C
164 168parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
48 49first strand
Strand 2
D
112 113parallel
Back to list of sheets
Back to top of page

There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
81 84first strand
Strand 2
D
94 97anti-parallel
Strand 3
D
104 109anti-parallel
Strand 4
D
138 143parallel
Strand 5
D
165 168parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il