Analysis of interatomic Contacts of Structural Units in PDB entry:
3WVJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3WVJ entry

There are 2 chains in PDB entry 3WVJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 30PRO 248
B
 ALA 30GLN 249
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 3WVJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
45 47Right-handed 310
Helix 2
2
A
127 131Right-handed 310
Helix 3
3
A
220 225Right-handed alpha
Helix 4
4
B
45 47Right-handed 310
Helix 5
5
B
127 131Right-handed 310
Helix 6
6
B
220 225Right-handed alpha
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There are 6 sheets in PDB entry 3WVJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 40first strand
Strand 2
A
233 243anti-parallel
Strand 3
A
75 82anti-parallel
Strand 4
A
69 72anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 64first strand
Strand 2
A
90 92parallel
Strand 3
A
75 82anti-parallel
Strand 4
A
233 243anti-parallel
Strand 5
A
104 111anti-parallel
Strand 6
A
176 183anti-parallel
Strand 7
A
186 191anti-parallel
Strand 8
A
194 199anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 51first strand
Strand 2
A
94 101anti-parallel
Strand 3
A
208 216anti-parallel
Strand 4
A
118 126anti-parallel
Strand 5
A
135 142anti-parallel
Strand 6
A
148 154anti-parallel
Strand 7
A
163 166anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 40first strand
Strand 2
B
233 243anti-parallel
Strand 3
B
75 82anti-parallel
Strand 4
B
69 72anti-parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
63 64first strand
Strand 2
B
90 92parallel
Strand 3
B
75 82anti-parallel
Strand 4
B
233 243anti-parallel
Strand 5
B
104 111anti-parallel
Strand 6
B
176 183anti-parallel
Strand 7
B
186 191anti-parallel
Strand 8
B
194 199anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 51first strand
Strand 2
B
94 97anti-parallel
Strand 3
B
209 216anti-parallel
Strand 4
B
118 126anti-parallel
Strand 5
B
135 142anti-parallel
Strand 6
B
148 154anti-parallel
Strand 7
B
163 166anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il