Analysis of interatomic Contacts of Structural Units in PDB entry:
3WVN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3WVN entry

There are 2 chains in PDB entry 3WVN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 23GLY 425
B
 ASP 24PHE 423
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 3WVN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
30 42Right-handed alpha
Helix 2
2
A
57 74Right-handed alpha
Helix 3
3
A
89 101Right-handed alpha
Helix 4
4
A
114 126Right-handed alpha
Helix 5
5
A
134 144Right-handed alpha
Helix 6
6
A
152 165Right-handed alpha
Helix 7
7
A
199 214Right-handed alpha
Helix 8
8
A
229 243Right-handed alpha
Helix 9
9
A
256 265Right-handed alpha
Helix 10
10
A
272 285Right-handed alpha
Helix 11
11
A
304 315Right-handed alpha
Helix 12
12
A
326 330Right-handed 310
Helix 13
13
A
336 340Right-handed 310
Helix 14
14
A
388 396Right-handed alpha
Helix 15
15
B
30 42Right-handed alpha
Helix 16
16
B
57 74Right-handed alpha
Helix 17
17
B
89 101Right-handed alpha
Helix 18
18
B
114 126Right-handed alpha
Helix 19
19
B
134 144Right-handed alpha
Helix 20
20
B
152 165Right-handed alpha
Helix 21
21
B
199 214Right-handed alpha
Helix 22
22
B
229 243Right-handed alpha
Helix 23
23
B
258 265Right-handed alpha
Helix 24
24
B
272 281Right-handed alpha
Helix 25
25
B
304 315Right-handed alpha
Helix 26
26
B
326 330Right-handed 310
Helix 27
27
B
336 340Right-handed 310
Helix 28
28
B
388 396Right-handed alpha
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There are 9 sheets in PDB entry 3WVN. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 56first strand
Strand 2
A
46 49anti-parallel
Strand 3
A
245 248parallel
Strand 4
A
220 223parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 109first strand
Strand 2
A
81 85parallel
Strand 3
A
129 132parallel
Strand 4
A
149 151parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 184first strand
Strand 2
A
194 198anti-parallel
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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
268 271first strand
Strand 2
A
295 298parallel
Strand 3
A
319 324parallel
Strand 4
A
333 334anti-parallel
Strand 5
A
346 350anti-parallel
Strand 6
A
421 423anti-parallel
Strand 7
A
407 415anti-parallel
Strand 8
A
372 377anti-parallel
Strand 9
A
355 358anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
54 56first strand
Strand 2
B
46 49anti-parallel
Strand 3
B
245 248parallel
Strand 4
B
220 223parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
105 108first strand
Strand 2
B
81 84parallel
Strand 3
B
129 132parallel
Strand 4
B
149 151parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
179 184first strand
Strand 2
B
194 198anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
268 271first strand
Strand 2
B
295 298parallel
Strand 3
B
319 324parallel
Strand 4
B
333 334anti-parallel
Strand 5
B
349 350anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
373 376first strand
Strand 2
B
407 412anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il