Analysis of interatomic Contacts of Structural Units in PDB entry:
3WVZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3WVZ entry

There are 2 chains in PDB entry 3WVZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA -3TRP 195
B
 ALA -3LYS 196
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 3WVZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
29 33Right-handed 310
Helix 2
2
A
118 122Right-handed alpha
Helix 3
3
A
137 155Right-handed alpha
Helix 4
4
A
161 163Right-handed 310
Helix 5
5
A
174 189Right-handed alpha
Helix 6
6
B
29 33Right-handed 310
Helix 7
7
B
118 122Right-handed alpha
Helix 8
8
B
135 154Right-handed alpha
Helix 9
9
B
155 157Right-handed 310
Helix 10
10
B
159 163Right-handed 310
Helix 11
11
B
175 191Right-handed alpha
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There are 5 sheets in PDB entry 3WVZ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 6first strand
Strand 2
A
35 40anti-parallel
Strand 3
A
79 83anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 19first strand
Strand 2
A
22 27anti-parallel
Strand 3
A
109 117anti-parallel
Strand 4
A
50 57anti-parallel
Strand 5
A
68 73anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 159first strand
Strand 2
B
170 173anti-parallel
Strand 3
A
171 173anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 12first strand
Strand 2
B
2 6anti-parallel
Strand 3
B
35 40anti-parallel
Strand 4
B
79 83anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 19first strand
Strand 2
B
22 27anti-parallel
Strand 3
B
109 117anti-parallel
Strand 4
B
50 58anti-parallel
Strand 5
B
66 73anti-parallel
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