Analysis of interatomic Contacts of Structural Units in PDB entry:
3WWH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3WWH entry

There is 1 chain in PDB entry 3WWH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2TYR 330
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 3WWH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 10Right-handed 310
Helix 2
2
A
47 51Right-handed 310
Helix 3
3
A
57 62Right-handed alpha
Helix 4
4
A
79 94Right-handed alpha
Helix 5
5
A
101 117Right-handed alpha
Helix 6
6
A
159 166Right-handed alpha
Helix 7
7
A
192 206Right-handed alpha
Helix 8
8
A
245 258Right-handed alpha
Helix 9
9
A
268 274Right-handed alpha
Helix 10
10
A
304 318Right-handed alpha
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There are 3 sheets in PDB entry 3WWH. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 46first strand
Strand 2
A
38 41anti-parallel
Strand 3
A
144 153anti-parallel
Strand 4
A
121 131anti-parallel
Strand 5
A
65 73anti-parallel
Strand 6
A
76 78anti-parallel
Strand 7
A
325 327anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
219 222first strand
Strand 2
A
209 213anti-parallel
Strand 3
A
167 171parallel
Strand 4
A
286 293parallel
Strand 5
A
277 282anti-parallel
Strand 6
A
226 231anti-parallel
Strand 7
A
234 238anti-parallel
Strand 8
A
262 265parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
219 222first strand
Strand 2
A
209 213anti-parallel
Strand 3
A
167 171parallel
Strand 4
A
286 293parallel
Strand 5
A
296 297anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il