Analysis of interatomic Contacts of Structural Units in PDB entry:
3WWO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3WWO entry

There are 2 chains in PDB entry 3WWO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 2SER 257
B
 SER 3LEU 259
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 28 helices in PDB entry 3WWO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 20Right-handed 310
Helix 2
2
A
21 29Right-handed alpha
Helix 3
3
A
47 51Right-handed 310
Helix 4
4
A
53 58Right-handed alpha
Helix 5
5
A
58 67Right-handed alpha
Helix 6
6
A
81 93Right-handed alpha
Helix 7
7
A
115 125Right-handed alpha
Helix 8
8
A
149 156Right-handed alpha
Helix 9
9
A
162 171Right-handed alpha
Helix 10
10
A
179 186Right-handed alpha
Helix 11
11
A
193 197Right-handed 310
Helix 12
12
A
211 222Right-handed alpha
Helix 13
13
A
236 241Right-handed alpha
Helix 14
14
A
241 257Right-handed alpha
Helix 15
15
B
15 20Right-handed 310
Helix 16
16
B
21 29Right-handed alpha
Helix 17
17
B
47 51Right-handed 310
Helix 18
18
B
53 58Right-handed alpha
Helix 19
19
B
58 67Right-handed alpha
Helix 20
20
B
81 93Right-handed alpha
Helix 21
21
B
115 125Right-handed alpha
Helix 22
22
B
149 156Right-handed alpha
Helix 23
23
B
162 171Right-handed alpha
Helix 24
24
B
179 186Right-handed alpha
Helix 25
25
B
193 197Right-handed 310
Helix 26
26
B
211 222Right-handed alpha
Helix 27
27
B
236 241Right-handed alpha
Helix 28
28
B
241 257Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 3WWO. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 35first strand
Strand 2
A
5 9parallel
Strand 3
A
74 79parallel
Strand 4
A
97 103parallel
Strand 5
A
198 204parallel
Strand 6
A
226 230parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 138first strand
Strand 2
A
141 147anti-parallel
Strand 3
A
176 177anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 35first strand
Strand 2
B
5 9parallel
Strand 3
B
74 79parallel
Strand 4
B
97 103parallel
Strand 5
B
198 204parallel
Strand 6
B
226 230parallel
Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
132 138first strand
Strand 2
B
141 147anti-parallel
Strand 3
B
176 177anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il