Analysis of interatomic Contacts of Structural Units in PDB entry:
3WWP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3WWP entry

There are 6 chains in PDB entry 3WWP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU -2VAL 262
B
 GLY -1LEU 259
G
 GLU -2LEU 259
L
 GLY -1SER 255
M
 GLY -1ALA 256
R
 GLY -1ALA 263
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 84 helices in PDB entry 3WWP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 20Right-handed 310
Helix 2
2
A
21 29Right-handed alpha
Helix 3
3
A
47 51Right-handed 310
Helix 4
4
A
53 58Right-handed alpha
Helix 5
5
A
58 67Right-handed alpha
Helix 6
6
A
81 93Right-handed alpha
Helix 7
7
A
115 125Right-handed alpha
Helix 8
8
A
149 156Right-handed alpha
Helix 9
9
A
162 171Right-handed alpha
Helix 10
10
A
179 186Right-handed alpha
Helix 11
11
A
193 197Right-handed 310
Helix 12
12
A
211 222Right-handed alpha
Helix 13
13
A
236 241Right-handed alpha
Helix 14
14
A
241 261Right-handed alpha
Helix 15
15
B
15 20Right-handed 310
Helix 16
16
B
21 29Right-handed alpha
Helix 17
17
B
47 51Right-handed 310
Helix 18
18
B
53 58Right-handed alpha
Helix 19
19
B
58 67Right-handed alpha
Helix 20
20
B
81 93Right-handed alpha
Helix 21
21
B
115 125Right-handed alpha
Helix 22
22
B
149 156Right-handed alpha
Helix 23
23
B
162 171Right-handed alpha
Helix 24
24
B
179 186Right-handed alpha
Helix 25
25
B
193 197Right-handed 310
Helix 26
26
B
211 222Right-handed alpha
Helix 27
27
B
236 241Right-handed alpha
Helix 28
28
B
241 257Right-handed alpha
Helix 29
29
G
15 20Right-handed 310
Helix 30
30
G
21 29Right-handed alpha
Helix 31
31
G
47 51Right-handed 310
Helix 32
32
G
53 58Right-handed alpha
Helix 33
33
G
58 67Right-handed alpha
Helix 34
34
G
81 93Right-handed alpha
Helix 35
35
G
115 125Right-handed alpha
Helix 36
36
G
149 156Right-handed alpha
Helix 37
37
G
162 171Right-handed alpha
Helix 38
38
G
179 184Right-handed alpha
Helix 39
39
G
193 197Right-handed 310
Helix 40
40
G
211 222Right-handed alpha
Helix 41
41
G
236 241Right-handed alpha
Helix 42
42
G
241 257Right-handed alpha
Helix 43
43
L
15 20Right-handed 310
Helix 44
44
L
22 29Right-handed alpha
Helix 45
45
L
47 51Right-handed 310
Helix 46
46
L
53 58Right-handed alpha
Helix 47
47
L
58 67Right-handed alpha
Helix 48
48
L
81 93Right-handed alpha
Helix 49
49
L
115 125Right-handed alpha
Helix 50
50
L
149 156Right-handed alpha
Helix 51
51
L
162 171Right-handed alpha
Helix 52
52
L
179 186Right-handed alpha
Helix 53
53
L
193 197Right-handed 310
Helix 54
54
L
211 222Right-handed alpha
Helix 55
55
L
236 241Right-handed alpha
Helix 56
56
L
241 255Right-handed alpha
Helix 57
57
M
15 20Right-handed 310
Helix 58
58
M
21 29Right-handed alpha
Helix 59
59
M
47 51Right-handed 310
Helix 60
60
M
53 58Right-handed alpha
Helix 61
61
M
58 67Right-handed alpha
Helix 62
62
M
81 93Right-handed alpha
Helix 63
63
M
115 125Right-handed alpha
Helix 64
64
M
149 156Right-handed alpha
Helix 65
65
M
162 171Right-handed alpha
Helix 66
66
M
179 184Right-handed alpha
Helix 67
67
M
193 197Right-handed 310
Helix 68
68
M
211 222Right-handed alpha
Helix 69
69
M
236 241Right-handed alpha
Helix 70
70
M
241 256Right-handed alpha
Helix 71
71
R
15 20Right-handed 310
Helix 72
72
R
22 29Right-handed alpha
Helix 73
73
R
47 51Right-handed 310
Helix 74
74
R
53 58Right-handed alpha
Helix 75
75
R
58 67Right-handed alpha
Helix 76
76
R
81 93Right-handed alpha
Helix 77
77
R
115 125Right-handed alpha
Helix 78
78
R
149 156Right-handed alpha
Helix 79
79
R
162 171Right-handed alpha
Helix 80
80
R
179 184Right-handed alpha
Helix 81
81
R
193 197Right-handed 310
Helix 82
82
R
211 222Right-handed alpha
Helix 83
83
R
236 241Right-handed alpha
Helix 84
84
R
241 254Right-handed alpha
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There are 12 sheets in PDB entry 3WWP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
-1 2first strand
Strand 2
R
0 3anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 35first strand
Strand 2
A
5 9parallel
Strand 3
A
74 79parallel
Strand 4
A
97 103parallel
Strand 5
A
198 204parallel
Strand 6
A
226 230parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 138first strand
Strand 2
A
141 147anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 35first strand
Strand 2
B
5 9parallel
Strand 3
B
74 79parallel
Strand 4
B
97 103parallel
Strand 5
B
198 204parallel
Strand 6
B
226 230parallel
Strand 7
L
132 138anti-parallel
Strand 8
L
141 147anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
132 138first strand
Strand 2
B
141 147anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
32 35first strand
Strand 2
G
5 9parallel
Strand 3
G
74 79parallel
Strand 4
G
97 103parallel
Strand 5
G
199 204parallel
Strand 6
G
226 230parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
132 138first strand
Strand 2
G
141 147anti-parallel
Strand 3
G
176 177anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
32 35first strand
Strand 2
L
5 9parallel
Strand 3
L
74 79parallel
Strand 4
L
97 103parallel
Strand 5
L
198 204parallel
Strand 6
L
226 230parallel
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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
32 35first strand
Strand 2
M
5 9parallel
Strand 3
M
74 79parallel
Strand 4
M
97 103parallel
Strand 5
M
198 204parallel
Strand 6
M
226 230parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
132 138first strand
Strand 2
M
141 147anti-parallel
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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
R
32 35first strand
Strand 2
R
5 9parallel
Strand 3
R
74 79parallel
Strand 4
R
97 103parallel
Strand 5
R
198 204parallel
Strand 6
R
226 230parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
R
132 138first strand
Strand 2
R
141 147anti-parallel
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