Analysis of interatomic Contacts of Structural Units in PDB entry:
3WXJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3WXJ entry

There are 4 chains in PDB entry 3WXJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE -1	LYS 511
B	PHE -1	LYS 511
C	PHE -1	LYS 511
D	PHE -1	LYS 511

There are 75 helices in PDB entry 3WXJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	46	69	Right-handed alpha
Helix 2	2	A	109	118	Right-handed alpha
Helix 3	3	A	140	152	Right-handed alpha
Helix 4	4	A	152	161	Right-handed alpha
Helix 5	5	A	169	179	Right-handed alpha
Helix 6	6	A	187	191	Right-handed alpha
Helix 7	7	A	204	211	Right-handed alpha
Helix 8	8	A	237	242	Right-handed alpha
Helix 9	9	A	254	262	Right-handed alpha
Helix 10	10	A	320	330	Right-handed alpha
Helix 11	11	A	339	346	Right-handed alpha
Helix 12	12	A	383	411	Right-handed alpha
Helix 13	13	A	426	438	Right-handed alpha
Helix 14	14	A	448	462	Right-handed alpha
Helix 15	15	A	467	478	Right-handed alpha
Helix 16	16	A	489	505	Right-handed alpha
Helix 17	17	B	46	69	Right-handed alpha
Helix 18	18	B	109	118	Right-handed alpha
Helix 19	19	B	140	150	Right-handed alpha
Helix 20	20	B	152	161	Right-handed alpha
Helix 21	21	B	169	177	Right-handed alpha
Helix 22	22	B	187	194	Right-handed alpha
Helix 23	23	B	204	211	Right-handed alpha
Helix 24	24	B	214	218	Right-handed 310
Helix 25	25	B	234	236	Right-handed 310
Helix 26	26	B	237	242	Right-handed alpha
Helix 27	27	B	254	261	Right-handed alpha
Helix 28	28	B	320	329	Right-handed alpha
Helix 29	29	B	336	346	Right-handed alpha
Helix 30	30	B	383	411	Right-handed alpha
Helix 31	31	B	426	438	Right-handed alpha
Helix 32	32	B	448	462	Right-handed alpha
Helix 33	33	B	467	477	Right-handed alpha
Helix 34	34	B	492	505	Right-handed alpha
Helix 35	35	C	46	69	Right-handed alpha
Helix 36	36	C	109	120	Right-handed alpha
Helix 37	37	C	128	133	Right-handed alpha
Helix 38	38	C	140	152	Right-handed alpha
Helix 39	39	C	152	161	Right-handed alpha
Helix 40	40	C	169	178	Right-handed alpha
Helix 41	41	C	187	191	Right-handed alpha
Helix 42	42	C	204	211	Right-handed alpha
Helix 43	43	C	214	218	Right-handed 310
Helix 44	44	C	234	236	Right-handed 310
Helix 45	45	C	237	242	Right-handed alpha
Helix 46	46	C	254	261	Right-handed alpha
Helix 47	47	C	320	330	Right-handed alpha
Helix 48	48	C	338	345	Right-handed alpha
Helix 49	49	C	383	411	Right-handed alpha
Helix 50	50	C	421	425	Right-handed 310
Helix 51	51	C	426	438	Right-handed alpha
Helix 52	52	C	448	462	Right-handed alpha
Helix 53	53	C	467	479	Right-handed alpha
Helix 54	54	C	490	506	Right-handed alpha
Helix 55	55	D	46	67	Right-handed alpha
Helix 56	56	D	107	109	Right-handed 310
Helix 57	57	D	110	115	Right-handed alpha
Helix 58	58	D	115	120	Right-handed alpha
Helix 59	59	D	128	133	Right-handed alpha
Helix 60	60	D	140	152	Right-handed alpha
Helix 61	61	D	152	162	Right-handed alpha
Helix 62	62	D	169	178	Right-handed alpha
Helix 63	63	D	204	211	Right-handed alpha
Helix 64	64	D	214	218	Right-handed 310
Helix 65	65	D	234	236	Right-handed 310
Helix 66	66	D	237	243	Right-handed alpha
Helix 67	67	D	255	262	Right-handed alpha
Helix 68	68	D	321	331	Right-handed alpha
Helix 69	69	D	336	342	Right-handed alpha
Helix 70	70	D	343	346	Right-handed 310
Helix 71	71	D	383	407	Right-handed alpha
Helix 72	72	D	429	438	Right-handed alpha
Helix 73	73	D	449	463	Right-handed alpha
Helix 74	74	D	467	478	Right-handed alpha
Helix 75	75	D	490	504	Right-handed alpha

There are 23 sheets in PDB entry 3WXJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	24	32	first strand
Strand 2	A	13	20	anti-parallel
Strand 3	A	3	9	anti-parallel
Strand 4	A	77	82	parallel
Strand 5	A	247	253	parallel
Strand 6	A	229	230	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	45	first strand
Strand 2	A	101	102	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	91	first strand
Strand 2	A	164	168	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	184	186	first strand
Strand 2	A	220	222	parallel

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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	296	301	first strand
Strand 2	A	310	317	anti-parallel
Strand 3	A	278	285	anti-parallel
Strand 4	A	270	274	anti-parallel
Strand 5	A	416	420	parallel
Strand 6	A	440	444	parallel
Strand 7	A	481	484	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	356	first strand
Strand 2	A	373	378	anti-parallel
Strand 3	B	373	378	anti-parallel
Strand 4	B	354	356	anti-parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	25	32	first strand
Strand 2	B	13	20	anti-parallel
Strand 3	B	3	9	anti-parallel
Strand 4	B	78	82	parallel
Strand 5	B	248	253	parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	45	first strand
Strand 2	B	101	102	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	91	first strand
Strand 2	B	164	168	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	184	186	first strand
Strand 2	B	220	222	parallel

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There are 7 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	297	302	first strand
Strand 2	B	309	313	anti-parallel
Strand 3	B	279	285	anti-parallel
Strand 4	B	270	273	anti-parallel
Strand 5	B	416	420	parallel
Strand 6	B	440	443	parallel
Strand 7	B	482	484	anti-parallel

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There are 6 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	25	32	first strand
Strand 2	C	13	19	anti-parallel
Strand 3	C	4	9	anti-parallel
Strand 4	C	77	82	parallel
Strand 5	C	247	253	parallel
Strand 6	C	225	230	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	44	45	first strand
Strand 2	C	101	102	anti-parallel

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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	97	first strand
Strand 2	C	87	91	anti-parallel
Strand 3	C	164	168	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	184	186	first strand
Strand 2	C	220	222	parallel

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There are 6 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	296	302	first strand
Strand 2	C	309	316	anti-parallel
Strand 3	C	279	283	anti-parallel
Strand 4	C	269	273	anti-parallel
Strand 5	C	416	419	parallel
Strand 6	C	441	442	parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	356	357	first strand
Strand 2	C	373	378	anti-parallel
Strand 3	D	373	378	anti-parallel
Strand 4	D	355	356	anti-parallel

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There are 6 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	25	32	first strand
Strand 2	D	13	19	anti-parallel
Strand 3	D	4	9	anti-parallel
Strand 4	D	77	82	parallel
Strand 5	D	247	253	parallel
Strand 6	D	225	230	anti-parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	44	45	first strand
Strand 2	D	101	102	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	87	89	first strand
Strand 2	D	166	168	anti-parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	184	185	first strand
Strand 2	D	220	221	parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	196	197	first strand
Strand 2	D	202	203	anti-parallel

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There are 7 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	296	302	first strand
Strand 2	D	309	317	anti-parallel
Strand 3	D	278	283	anti-parallel
Strand 4	D	269	274	anti-parallel
Strand 5	D	416	420	parallel
Strand 6	D	440	444	parallel
Strand 7	D	481	484	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3WXJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
3WXJ