Analysis of interatomic Contacts of Structural Units in PDB entry:
3WY9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3WY9 entry

There are 4 chains in PDB entry 3WY9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 5GLY 427
B
 LYS 5GLY 427
C
 GLU 83GLY 108
D
 GLU 83GLY 108
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 3WY9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 32Right-handed alpha
Helix 2
2
A
35 43Right-handed alpha
Helix 3
3
A
53 67Right-handed alpha
Helix 4
4
A
70 75Right-handed alpha
Helix 5
5
A
95 103Right-handed alpha
Helix 6
6
A
121 134Right-handed alpha
Helix 7
7
A
145 150Right-handed 310
Helix 8
8
A
152 171Right-handed alpha
Helix 9
9
A
202 209Right-handed alpha
Helix 10
10
A
215 219Right-handed 310
Helix 11
11
A
257 263Right-handed alpha
Helix 12
12
A
297 301Right-handed 310
Helix 13
13
A
401 404Right-handed 310
Helix 14
14
B
19 32Right-handed alpha
Helix 15
15
B
35 43Right-handed alpha
Helix 16
16
B
53 67Right-handed alpha
Helix 17
17
B
70 75Right-handed alpha
Helix 18
18
B
95 102Right-handed alpha
Helix 19
19
B
121 134Right-handed alpha
Helix 20
20
B
145 150Right-handed 310
Helix 21
21
B
152 170Right-handed alpha
Helix 22
22
B
202 208Right-handed alpha
Helix 23
23
B
215 219Right-handed 310
Helix 24
24
B
257 262Right-handed alpha
Helix 25
25
B
401 404Right-handed 310
Helix 26
26
C
84 107Right-handed alpha
Helix 27
27
D
84 108Right-handed alpha
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There are 10 sheets in PDB entry 3WY9. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 79first strand
Strand 2
A
84 89anti-parallel
Strand 3
A
7 13parallel
Strand 4
A
109 115parallel
Strand 5
A
138 144parallel
Strand 6
A
177 179parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
278 280first strand
Strand 2
A
267 275anti-parallel
Strand 3
A
288 293anti-parallel
Strand 4
A
235 241anti-parallel
Strand 5
A
223 231anti-parallel
Strand 6
A
306 309anti-parallel
Strand 7
A
252 256anti-parallel
Strand 8
A
267 275anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
247 248first strand
Strand 2
A
282 283anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
316 317first strand
Strand 2
A
393 394anti-parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
369 372first strand
Strand 2
A
349 362anti-parallel
Strand 3
A
382 389anti-parallel
Strand 4
A
322 329anti-parallel
Strand 5
A
414 425anti-parallel
Strand 6
A
406 411anti-parallel
Strand 7
A
343 346anti-parallel
Strand 8
A
349 362anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 80first strand
Strand 2
B
83 89anti-parallel
Strand 3
B
7 13parallel
Strand 4
B
109 115parallel
Strand 5
B
138 144parallel
Strand 6
B
177 179parallel
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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
278 280first strand
Strand 2
B
267 275anti-parallel
Strand 3
B
288 293anti-parallel
Strand 4
B
235 241anti-parallel
Strand 5
B
223 231anti-parallel
Strand 6
B
306 309anti-parallel
Strand 7
B
252 256anti-parallel
Strand 8
B
267 275anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
247 248first strand
Strand 2
B
282 283anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
316 317first strand
Strand 2
B
393 394anti-parallel
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There are 8 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
369 372first strand
Strand 2
B
349 362anti-parallel
Strand 3
B
382 389anti-parallel
Strand 4
B
322 329anti-parallel
Strand 5
B
414 425anti-parallel
Strand 6
B
406 411anti-parallel
Strand 7
B
343 346anti-parallel
Strand 8
B
349 362anti-parallel
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