Analysis of interatomic Contacts of Structural Units in PDB entry:
3WYA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3WYA entry

There is 1 chain in PDB entry 3WYA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 5GLY 427
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 3WYA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 31Right-handed alpha
Helix 2
2
A
54 64Right-handed alpha
Helix 3
3
A
95 102Right-handed alpha
Helix 4
4
A
121 134Right-handed alpha
Helix 5
5
A
145 150Right-handed 310
Helix 6
6
A
152 170Right-handed alpha
Helix 7
7
A
202 208Right-handed alpha
Helix 8
8
A
215 219Right-handed 310
Helix 9
9
A
257 263Right-handed alpha
Helix 10
10
A
297 301Right-handed 310
Helix 11
11
A
401 404Right-handed 310
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There are 5 sheets in PDB entry 3WYA. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 79first strand
Strand 2
A
84 89anti-parallel
Strand 3
A
7 13parallel
Strand 4
A
109 115parallel
Strand 5
A
138 144parallel
Strand 6
A
177 179parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
278 280first strand
Strand 2
A
267 275anti-parallel
Strand 3
A
288 293anti-parallel
Strand 4
A
235 241anti-parallel
Strand 5
A
223 231anti-parallel
Strand 6
A
306 309anti-parallel
Strand 7
A
252 256anti-parallel
Strand 8
A
267 275anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
247 248first strand
Strand 2
A
282 283anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
316 317first strand
Strand 2
A
393 394anti-parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
369 372first strand
Strand 2
A
349 362anti-parallel
Strand 3
A
382 389anti-parallel
Strand 4
A
322 329anti-parallel
Strand 5
A
414 425anti-parallel
Strand 6
A
406 411anti-parallel
Strand 7
A
343 346anti-parallel
Strand 8
A
349 362anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il