Analysis of interatomic Contacts of Structural Units in PDB entry:
3WYD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3WYD entry

There are 2 chains in PDB entry 3WYD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 304PRO 502
B
 PRO 304LYS 500
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 3WYD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
333 338Right-handed alpha
Helix 2
2
A
338 352Right-handed alpha
Helix 3
3
A
369 386Right-handed alpha
Helix 4
4
A
399 412Right-handed alpha
Helix 5
5
A
427 435Right-handed 310
Helix 6
6
A
452 464Right-handed alpha
Helix 7
7
A
481 486Right-handed alpha
Helix 8
8
A
486 496Right-handed alpha
Helix 9
9
B
333 338Right-handed alpha
Helix 10
10
B
338 352Right-handed alpha
Helix 11
11
B
369 386Right-handed alpha
Helix 12
12
B
399 412Right-handed alpha
Helix 13
13
B
427 435Right-handed 310
Helix 14
14
B
452 465Right-handed alpha
Helix 15
15
B
481 486Right-handed alpha
Helix 16
16
B
486 496Right-handed alpha
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There are 4 sheets in PDB entry 3WYD. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
305 308first strand
Strand 2
A
354 358anti-parallel
Strand 3
A
319 325parallel
Strand 4
A
388 398parallel
Strand 5
A
418 422parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
439 444first strand
Strand 2
A
469 474parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
305 308first strand
Strand 2
B
354 358anti-parallel
Strand 3
B
319 325parallel
Strand 4
B
388 398parallel
Strand 5
B
418 422parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
439 444first strand
Strand 2
B
469 474parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il