Analysis of interatomic Contacts of Structural Units in PDB entry:
3WYF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3WYF entry

There are 6 chains in PDB entry 3WYF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 10ASP 213
B
 LYS 97VAL 325
C
 GLY -1GLY 1075
D
 VAL 10ASP 213
E
 LYS 97SER 324
F
 GLY -1ASP 1054
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are147 helices in PDB entry 3WYF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
24 35Right-handed alpha
Helix 2
2
A
71 75Right-handed 310
Helix 3
3
A
77 82Right-handed 310
Helix 4
4
A
96 102Right-handed alpha
Helix 5
5
A
102 114Right-handed alpha
Helix 6
6
A
134 138Right-handed 310
Helix 7
7
A
140 145Right-handed alpha
Helix 8
8
A
160 172Right-handed alpha
Helix 9
9
B
146 150Right-handed 310
Helix 10
10
B
151 155Right-handed 310
Helix 11
11
B
285 287Right-handed 310
Helix 12
12
B
311 323Right-handed alpha
Helix 13
13
C
0 6Right-handed 310
Helix 14
14
C
12 26Right-handed alpha
Helix 15
15
C
27 44Right-handed alpha
Helix 16
16
C
46 49Right-handed 310
Helix 17
17
C
50 58Right-handed alpha
Helix 18
18
C
60 79Right-handed alpha
Helix 19
19
C
80 82Right-handed 310
Helix 20
20
C
83 103Right-handed alpha
Helix 21
21
C
104 111Right-handed alpha
Helix 22
22
C
111 130Right-handed alpha
Helix 23
23
C
136 145Right-handed alpha
Helix 24
24
C
148 168Right-handed alpha
Helix 25
25
C
175 204Right-handed alpha
Helix 26
26
C
206 221Right-handed alpha
Helix 27
27
C
226 231Right-handed alpha
Helix 28
28
C
233 240Right-handed alpha
Helix 29
29
C
240 245Right-handed alpha
Helix 30
30
C
248 262Right-handed alpha
Helix 31
31
C
268 290Right-handed alpha
Helix 32
32
C
296 304Right-handed alpha
Helix 33
33
C
307 332Right-handed alpha
Helix 34
34
C
333 335Right-handed 310
Helix 35
35
C
336 351Right-handed alpha
Helix 36
36
C
355 376Right-handed alpha
Helix 37
37
C
414 418Right-handed 310
Helix 38
38
C
420 434Right-handed alpha
Helix 39
39
C
458 479Right-handed alpha
Helix 40
40
C
479 496Right-handed alpha
Helix 41
41
C
501 515Right-handed alpha
Helix 42
42
C
520 542Right-handed alpha
Helix 43
43
C
544 562Right-handed alpha
Helix 44
44
C
562 568Right-handed alpha
Helix 45
45
C
569 584Right-handed alpha
Helix 46
46
C
588 607Right-handed alpha
Helix 47
47
C
607 612Right-handed alpha
Helix 48
48
C
620 628Right-handed alpha
Helix 49
49
C
628 633Right-handed alpha
Helix 50
50
C
637 653Right-handed alpha
Helix 51
51
C
657 669Right-handed alpha
Helix 52
52
C
669 686Right-handed alpha
Helix 53
53
C
687 691Right-handed 310
Helix 54
54
C
692 714Right-handed alpha
Helix 55
55
C
717 747Right-handed alpha
Helix 56
56
C
748 752Right-handed 310
Helix 57
57
C
753 777Right-handed alpha
Helix 58
58
C
779 787Right-handed alpha
Helix 59
59
C
787 802Right-handed alpha
Helix 60
60
C
803 807Right-handed 310
Helix 61
61
C
808 823Right-handed alpha
Helix 62
62
C
826 846Right-handed alpha
Helix 63
63
C
852 870Right-handed alpha
Helix 64
64
C
871 876Right-handed alpha
Helix 65
65
C
878 895Right-handed alpha
Helix 66
66
C
897 918Right-handed alpha
Helix 67
67
C
921 945Right-handed alpha
Helix 68
68
C
948 950Right-handed 310
Helix 69
69
C
951 968Right-handed alpha
Helix 70
70
C
977 981Right-handed 310
Helix 71
71
C
986 1003Right-handed alpha
Helix 72
72
C
1007 1022Right-handed alpha
Helix 73
73
C
1024 1039Right-handed alpha
Helix 74
74
C
1045 1049Right-handed 310
Helix 75
75
C
1050 1074Right-handed alpha
Helix 76
76
D
24 35Right-handed alpha
Helix 77
77
D
71 75Right-handed 310
Helix 78
78
D
77 83Right-handed 310
Helix 79
79
D
96 102Right-handed alpha
Helix 80
80
D
102 112Right-handed alpha
Helix 81
81
D
134 138Right-handed 310
Helix 82
82
D
140 145Right-handed alpha
Helix 83
83
D
160 172Right-handed alpha
Helix 84
84
E
151 155Right-handed 310
Helix 85
85
E
285 287Right-handed 310
Helix 86
86
E
310 323Right-handed alpha
Helix 87
87
F
0 6Right-handed 310
Helix 88
88
F
12 26Right-handed alpha
Helix 89
89
F
27 44Right-handed alpha
Helix 90
90
F
46 49Right-handed 310
Helix 91
91
F
50 58Right-handed alpha
Helix 92
92
F
60 79Right-handed alpha
Helix 93
93
F
80 82Right-handed 310
Helix 94
94
F
83 103Right-handed alpha
Helix 95
95
F
104 111Right-handed alpha
Helix 96
96
F
111 130Right-handed alpha
Helix 97
97
F
136 146Right-handed alpha
Helix 98
98
F
148 168Right-handed alpha
Helix 99
99
F
175 189Right-handed alpha
Helix 100
100
F
189 204Right-handed alpha
Helix 101
101
F
206 221Right-handed alpha
Helix 102
102
F
226 231Right-handed alpha
Helix 103
103
F
233 240Right-handed alpha
Helix 104
104
F
240 245Right-handed alpha
Helix 105
105
F
248 260Right-handed alpha
Helix 106
106
F
268 290Right-handed alpha
Helix 107
107
F
296 303Right-handed alpha
Helix 108
108
F
307 332Right-handed alpha
Helix 109
109
F
333 335Right-handed 310
Helix 110
110
F
336 351Right-handed alpha
Helix 111
111
F
355 376Right-handed alpha
Helix 112
112
F
414 419Right-handed 310
Helix 113
113
F
420 434Right-handed alpha
Helix 114
114
F
458 479Right-handed alpha
Helix 115
115
F
479 496Right-handed alpha
Helix 116
116
F
501 515Right-handed alpha
Helix 117
117
F
520 542Right-handed alpha
Helix 118
118
F
544 562Right-handed alpha
Helix 119
119
F
562 569Right-handed alpha
Helix 120
120
F
569 584Right-handed alpha
Helix 121
121
F
588 607Right-handed alpha
Helix 122
122
F
607 612Right-handed alpha
Helix 123
123
F
620 628Right-handed alpha
Helix 124
124
F
628 633Right-handed alpha
Helix 125
125
F
637 653Right-handed alpha
Helix 126
126
F
657 669Right-handed alpha
Helix 127
127
F
669 686Right-handed alpha
Helix 128
128
F
696 714Right-handed alpha
Helix 129
129
F
717 742Right-handed alpha
Helix 130
130
F
754 777Right-handed alpha
Helix 131
131
F
779 787Right-handed alpha
Helix 132
132
F
787 802Right-handed alpha
Helix 133
133
F
803 808Right-handed 310
Helix 134
134
F
809 823Right-handed alpha
Helix 135
135
F
826 844Right-handed alpha
Helix 136
136
F
852 870Right-handed alpha
Helix 137
137
F
871 876Right-handed alpha
Helix 138
138
F
878 895Right-handed alpha
Helix 139
139
F
897 918Right-handed alpha
Helix 140
140
F
921 945Right-handed alpha
Helix 141
141
F
948 950Right-handed 310
Helix 142
142
F
951 968Right-handed alpha
Helix 143
143
F
977 981Right-handed 310
Helix 144
144
F
986 1003Right-handed alpha
Helix 145
145
F
1007 1022Right-handed alpha
Helix 146
146
F
1024 1039Right-handed alpha
Helix 147
147
F
1045 1051Right-handed 310
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There are 6 sheets in PDB entry 3WYF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 56first strand
Strand 2
A
59 68anti-parallel
Strand 3
A
12 19parallel
Strand 4
A
87 93parallel
Strand 5
A
119 124parallel
Strand 6
A
147 150parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
264 270first strand
Strand 2
B
252 257anti-parallel
Strand 3
B
232 244anti-parallel
Strand 4
B
213 225anti-parallel
Strand 5
B
303 307anti-parallel
Strand 6
B
289 293anti-parallel
Strand 7
B
276 278anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
443 445first strand
Strand 2
C
451 453anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
47 56first strand
Strand 2
D
59 68anti-parallel
Strand 3
D
12 19parallel
Strand 4
D
87 93parallel
Strand 5
D
119 124parallel
Strand 6
D
147 150parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
264 269first strand
Strand 2
E
252 257anti-parallel
Strand 3
E
232 245anti-parallel
Strand 4
E
212 225anti-parallel
Strand 5
E
303 307anti-parallel
Strand 6
E
289 293anti-parallel
Strand 7
E
276 278anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
443 445first strand
Strand 2
F
451 453anti-parallel
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