Analysis of interatomic Contacts of Structural Units in PDB entry:
3X05


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3X05 entry

There are 2 chains in PDB entry 3X05 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 33THR 416
B
 VAL 33THR 416
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 3X05. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
40 59Right-handed alpha
Helix 2
2
A
67 72Right-handed 310
Helix 3
3
A
99 110Right-handed alpha
Helix 4
4
A
113 123Right-handed alpha
Helix 5
5
A
153 174Right-handed alpha
Helix 6
6
A
227 232Right-handed alpha
Helix 7
7
A
239 246Right-handed alpha
Helix 8
8
A
253 274Right-handed alpha
Helix 9
9
A
288 304Right-handed alpha
Helix 10
10
A
399 414Right-handed alpha
Helix 11
11
B
40 59Right-handed alpha
Helix 12
12
B
67 72Right-handed 310
Helix 13
13
B
99 110Right-handed alpha
Helix 14
14
B
113 123Right-handed alpha
Helix 15
15
B
153 174Right-handed alpha
Helix 16
16
B
239 247Right-handed alpha
Helix 17
17
B
253 274Right-handed alpha
Helix 18
18
B
400 413Right-handed alpha
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There are 4 sheets in PDB entry 3X05. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 12 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 141first strand
Strand 2
A
147 152anti-parallel
Strand 3
A
194 202anti-parallel
Strand 4
A
183 191anti-parallel
Strand 5
A
92 98anti-parallel
Strand 6
A
74 82anti-parallel
Strand 7
B
74 82anti-parallel
Strand 8
B
92 98anti-parallel
Strand 9
B
183 191anti-parallel
Strand 10
B
194 202anti-parallel
Strand 11
B
147 152anti-parallel
Strand 12
B
139 141anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 238first strand
Strand 2
A
213 217parallel
Strand 3
A
280 287anti-parallel
Strand 4
A
361 368anti-parallel
Strand 5
A
350 352anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
250 251first strand
Strand 2
A
415 416parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
237 238first strand
Strand 2
B
213 217parallel
Strand 3
B
280 287anti-parallel
Strand 4
B
361 368anti-parallel
Strand 5
B
350 352anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il