Analysis of interatomic Contacts of Structural Units in PDB entry:
3X0D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3X0D entry

There is 1 chain in PDB entry 3X0D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 21SER 644
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 3X0D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 31Right-handed alpha
Helix 2
2
A
35 38Right-handed 310
Helix 3
3
A
39 61Right-handed alpha
Helix 4
4
A
76 85Right-handed alpha
Helix 5
5
A
96 109Right-handed alpha
Helix 6
6
A
150 162Right-handed alpha
Helix 7
7
A
183 188Right-handed alpha
Helix 8
8
A
217 221Right-handed 310
Helix 9
9
A
222 226Right-handed 310
Helix 10
10
A
242 246Right-handed 310
Helix 11
11
A
287 291Right-handed 310
Helix 12
12
A
348 353Right-handed alpha
Helix 13
13
A
354 366Right-handed alpha
Helix 14
14
A
367 379Right-handed alpha
Helix 15
15
A
391 397Right-handed alpha
Helix 16
16
A
409 423Right-handed alpha
Helix 17
17
A
433 437Right-handed 310
Helix 18
18
A
455 459Right-handed 310
Helix 19
19
A
460 473Right-handed alpha
Helix 20
20
A
495 500Right-handed 310
Helix 21
21
A
511 526Right-handed alpha
Helix 22
22
A
533 537Right-handed 310
Helix 23
23
A
569 572Right-handed 310
Helix 24
24
A
615 619Right-handed 310
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There are 12 sheets in PDB entry 3X0D. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 119first strand
Strand 2
A
89 93parallel
Strand 3
A
67 71parallel
Strand 4
A
134 139parallel
Strand 5
A
163 170parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 216first strand
Strand 2
A
303 306anti-parallel
Strand 3
A
266 274anti-parallel
Strand 4
A
173 182anti-parallel
Strand 5
A
233 239anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 228first strand
Strand 2
A
173 182anti-parallel
Strand 3
A
266 274anti-parallel
Strand 4
A
282 284anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
250 257first strand
Strand 2
A
319 326anti-parallel
Strand 3
A
331 334anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 263first strand
Strand 2
A
313 314anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
428 431first strand
Strand 2
A
402 406parallel
Strand 3
A
382 386parallel
Strand 4
A
443 445parallel
Strand 5
A
478 480parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
530 532first strand
Strand 2
A
609 612anti-parallel
Strand 3
A
575 583anti-parallel
Strand 4
A
483 488anti-parallel
Strand 5
A
546 552anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
530 532first strand
Strand 2
A
609 612anti-parallel
Strand 3
A
575 583anti-parallel
Strand 4
A
586 589anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
491 493first strand
Strand 2
A
539 541anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
505 506first strand
Strand 2
A
509 510anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
560 567first strand
Strand 2
A
623 630anti-parallel
Strand 3
A
637 642anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
592 595first strand
Strand 2
A
601 603anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il