Analysis of interatomic Contacts of Structural Units in PDB entry:
3ZD8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3ZD8 entry

There are 2 chains in PDB entry 3ZD8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2ARG 251
B
 ALA 2VAL 250
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 3ZD8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 22Right-handed alpha
Helix 2
2
A
25 41Right-handed alpha
Helix 3
3
A
57 63Right-handed alpha
Helix 4
4
A
74 91Right-handed alpha
Helix 5
5
A
103 117Right-handed alpha
Helix 6
6
A
127 134Right-handed 310
Helix 7
7
A
150 159Right-handed alpha
Helix 8
8
A
161 163Right-handed 310
Helix 9
9
A
164 173Right-handed alpha
Helix 10
10
A
175 178Right-handed 310
Helix 11
11
A
186 198Right-handed alpha
Helix 12
12
A
199 206Right-handed alpha
Helix 13
13
A
207 210Right-handed 310
Helix 14
14
A
211 220Right-handed alpha
Helix 15
15
A
221 233Right-handed alpha
Helix 16
16
A
243 247Right-handed 310
Helix 17
17
B
10 22Right-handed alpha
Helix 18
18
B
25 41Right-handed alpha
Helix 19
19
B
57 63Right-handed alpha
Helix 20
20
B
74 91Right-handed alpha
Helix 21
21
B
103 117Right-handed alpha
Helix 22
22
B
127 134Right-handed 310
Helix 23
23
B
150 158Right-handed alpha
Helix 24
24
B
161 163Right-handed 310
Helix 25
25
B
164 173Right-handed alpha
Helix 26
26
B
175 178Right-handed 310
Helix 27
27
B
186 198Right-handed alpha
Helix 28
28
B
199 206Right-handed alpha
Helix 29
29
B
207 210Right-handed 310
Helix 30
30
B
211 221Right-handed alpha
Helix 31
31
B
221 233Right-handed alpha
Helix 32
32
B
243 247Right-handed 310
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There are 2 sheets in PDB entry 3ZD8. Click on sheet of interest to get list of strands forming it: AA, BA,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 96first strand
Strand 2
A
44 48parallel
Strand 3
A
4 9parallel
Strand 4
A
120 124parallel
Strand 5
A
138 142parallel
Strand 6
A
147 148anti-parallel
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
95 96first strand
Strand 2
B
44 48parallel
Strand 3
B
4 9parallel
Strand 4
B
120 124parallel
Strand 5
B
138 142parallel
Strand 6
B
147 148anti-parallel
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