Analysis of interatomic Contacts of Structural Units in PDB entry:
3ZDN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3ZDN entry

There are 4 chains in PDB entry 3ZDN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLY 486
B	MET 1	LEU 485
C	MET 1	GLY 486
D	MET 1	GLY 486

There are 71 helices in PDB entry 3ZDN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	48	61	Right-handed alpha
Helix 2	2	A	99	109	Right-handed alpha
Helix 3	3	A	141	158	Right-handed alpha
Helix 4	4	A	179	185	Right-handed alpha
Helix 5	5	A	187	194	Right-handed alpha
Helix 6	6	A	195	199	Right-handed 310
Helix 7	7	A	200	216	Right-handed alpha
Helix 8	8	A	223	234	Right-handed alpha
Helix 9	9	A	237	247	Right-handed alpha
Helix 10	10	A	253	268	Right-handed alpha
Helix 11	11	A	312	316	Right-handed 310
Helix 12	12	A	323	333	Right-handed alpha
Helix 13	13	A	347	352	Right-handed 310
Helix 14	14	A	384	388	Right-handed 310
Helix 15	15	A	394	404	Right-handed alpha
Helix 16	16	A	436	447	Right-handed alpha
Helix 17	17	A	456	460	Right-handed 310
Helix 18	18	A	466	486	Right-handed alpha
Helix 19	19	B	48	61	Right-handed alpha
Helix 20	20	B	99	109	Right-handed alpha
Helix 21	21	B	141	158	Right-handed alpha
Helix 22	22	B	187	196	Right-handed alpha
Helix 23	23	B	197	199	Right-handed 310
Helix 24	24	B	200	216	Right-handed alpha
Helix 25	25	B	223	234	Right-handed alpha
Helix 26	26	B	237	247	Right-handed alpha
Helix 27	27	B	253	268	Right-handed alpha
Helix 28	28	B	309	316	Right-handed 310
Helix 29	29	B	323	333	Right-handed alpha
Helix 30	30	B	347	352	Right-handed 310
Helix 31	31	B	394	404	Right-handed alpha
Helix 32	32	B	436	447	Right-handed alpha
Helix 33	33	B	456	460	Right-handed 310
Helix 34	34	B	466	485	Right-handed alpha
Helix 35	35	C	48	61	Right-handed alpha
Helix 36	36	C	99	109	Right-handed alpha
Helix 37	37	C	141	158	Right-handed alpha
Helix 38	38	C	173	178	Right-handed 310
Helix 39	39	C	179	185	Right-handed alpha
Helix 40	40	C	187	194	Right-handed alpha
Helix 41	41	C	195	199	Right-handed 310
Helix 42	42	C	200	216	Right-handed alpha
Helix 43	43	C	223	234	Right-handed alpha
Helix 44	44	C	237	247	Right-handed alpha
Helix 45	45	C	252	267	Right-handed alpha
Helix 46	46	C	312	316	Right-handed 310
Helix 47	47	C	323	333	Right-handed alpha
Helix 48	48	C	347	351	Right-handed 310
Helix 49	49	C	384	388	Right-handed 310
Helix 50	50	C	394	405	Right-handed alpha
Helix 51	51	C	436	447	Right-handed alpha
Helix 52	52	C	456	460	Right-handed 310
Helix 53	53	C	466	486	Right-handed alpha
Helix 54	54	D	48	61	Right-handed alpha
Helix 55	55	D	99	109	Right-handed alpha
Helix 56	56	D	141	158	Right-handed alpha
Helix 57	57	D	179	185	Right-handed alpha
Helix 58	58	D	187	196	Right-handed alpha
Helix 59	59	D	197	199	Right-handed 310
Helix 60	60	D	200	216	Right-handed alpha
Helix 61	61	D	223	234	Right-handed alpha
Helix 62	62	D	237	247	Right-handed alpha
Helix 63	63	D	253	267	Right-handed alpha
Helix 64	64	D	312	316	Right-handed 310
Helix 65	65	D	323	333	Right-handed alpha
Helix 66	66	D	347	352	Right-handed 310
Helix 67	67	D	384	388	Right-handed 310
Helix 68	68	D	394	404	Right-handed alpha
Helix 69	69	D	436	447	Right-handed alpha
Helix 70	70	D	456	460	Right-handed 310
Helix 71	71	D	466	486	Right-handed alpha

There are 20 sheets in PDB entry 3ZDN. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC, BD, BE, CA, CB, CC, CD, CE, A, DB, C, DD, DE,

There are 9 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	20	first strand
Strand 2	A	2	10	anti-parallel
Strand 3	A	412	417	anti-parallel
Strand 4	A	339	345	anti-parallel
Strand 5	A	377	383	anti-parallel
Strand 6	A	365	371	anti-parallel
Strand 7	A	354	357	anti-parallel
Strand 8	A	128	131	parallel
Strand 9	A	138	140	anti-parallel

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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	274	first strand
Strand 2	A	65	68	parallel
Strand 3	A	42	45	parallel
Strand 4	A	303	306	parallel
Strand 5	A	452	454	parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	80	83	first strand
Strand 2	A	86	89	anti-parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	117	first strand
Strand 2	A	248	250	anti-parallel

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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	298	301	first strand
Strand 2	A	289	293	anti-parallel
Strand 3	A	279	284	anti-parallel
Strand 4	A	317	319	parallel

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There are 9 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	14	20	first strand
Strand 2	B	2	10	anti-parallel
Strand 3	B	412	417	anti-parallel
Strand 4	B	339	345	anti-parallel
Strand 5	B	377	383	anti-parallel
Strand 6	B	365	371	anti-parallel
Strand 7	B	354	357	anti-parallel
Strand 8	B	128	131	parallel
Strand 9	B	138	140	anti-parallel

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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	271	274	first strand
Strand 2	B	65	68	parallel
Strand 3	B	42	45	parallel
Strand 4	B	303	306	parallel
Strand 5	B	452	454	parallel

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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	80	83	first strand
Strand 2	B	86	89	anti-parallel

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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	115	117	first strand
Strand 2	B	248	250	anti-parallel

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There are 4 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	298	301	first strand
Strand 2	B	289	293	anti-parallel
Strand 3	B	279	284	anti-parallel
Strand 4	B	317	319	parallel

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There are 9 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	14	17	first strand
Strand 2	C	7	10	anti-parallel
Strand 3	C	412	417	anti-parallel
Strand 4	C	339	345	anti-parallel
Strand 5	C	377	383	anti-parallel
Strand 6	C	365	371	anti-parallel
Strand 7	C	353	357	anti-parallel
Strand 8	C	127	131	parallel
Strand 9	C	138	140	anti-parallel

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There are 5 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	271	275	first strand
Strand 2	C	65	69	parallel
Strand 3	C	42	45	parallel
Strand 4	C	303	306	parallel
Strand 5	C	452	454	parallel

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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	80	83	first strand
Strand 2	C	86	89	anti-parallel

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There are 2 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	115	117	first strand
Strand 2	C	248	250	anti-parallel

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There are 4 strands in CE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	298	301	first strand
Strand 2	C	289	293	anti-parallel
Strand 3	C	279	284	anti-parallel
Strand 4	C	317	319	parallel

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There are 9 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	14	17	first strand
Strand 2	D	7	10	anti-parallel
Strand 3	D	412	417	anti-parallel
Strand 4	D	339	345	anti-parallel
Strand 5	D	377	383	anti-parallel
Strand 6	D	365	371	anti-parallel
Strand 7	D	354	357	anti-parallel
Strand 8	D	128	131	parallel
Strand 9	D	138	140	anti-parallel

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There are 5 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	271	274	first strand
Strand 2	D	65	68	parallel
Strand 3	D	42	45	parallel
Strand 4	D	303	306	parallel
Strand 5	D	452	454	parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	80	83	first strand
Strand 2	D	86	89	anti-parallel

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There are 2 strands in DD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	115	117	first strand
Strand 2	D	248	250	anti-parallel

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There are 4 strands in DE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	298	301	first strand
Strand 2	D	289	293	anti-parallel
Strand 3	D	279	284	anti-parallel
Strand 4	D	317	319	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3ZDN

Analysis of interatomic Contacts of Structural Units in PDB entry:
3ZDN