Analysis of interatomic Contacts of Structural Units in PDB entry:
3ZDO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3ZDO entry

There are 8 chains in PDB entry 3ZDO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 309MET 371
B
 ASP 309ILE 370
C
 LEU 311ALA 373
D
 ASP 308MET 371
E
 ASP 309ILE 370
F
 ASP 309ALA 373
G
 ASP 308MET 371
H
 ASP 309ILE 370
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 3ZDO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
309 340Right-handed alpha
Helix 2
2
A
341 371Right-handed alpha
Helix 3
3
B
309 370Right-handed alpha
Helix 4
4
C
311 373Right-handed alpha
Helix 5
5
D
308 341Right-handed alpha
Helix 6
6
D
341 370Right-handed alpha
Helix 7
7
E
309 370Right-handed alpha
Helix 8
8
F
309 372Right-handed alpha
Helix 9
9
G
308 340Right-handed alpha
Helix 10
10
G
341 370Right-handed alpha
Helix 11
11
H
309 340Right-handed alpha
Helix 12
12
H
340 369Right-handed alpha
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There are no sheets in PDB entry 3ZDO
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il