Analysis of interatomic Contacts of Structural Units in PDB entry:
3ZDP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3ZDP entry

There are 3 chains in PDB entry 3ZDP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 21ASN 498
B
 ASN 21ASN 498
C
 ASN 21ASN 498
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 63 helices in PDB entry 3ZDP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 48Right-handed alpha
Helix 2
2
A
50 55Right-handed alpha
Helix 3
3
A
56 73Right-handed alpha
Helix 4
4
A
113 124Right-handed alpha
Helix 5
5
A
129 148Right-handed alpha
Helix 6
6
A
150 156Right-handed alpha
Helix 7
7
A
160 167Right-handed 310
Helix 8
8
A
180 184Right-handed 310
Helix 9
9
A
185 200Right-handed alpha
Helix 10
10
A
210 230Right-handed alpha
Helix 11
11
A
232 244Right-handed alpha
Helix 12
12
A
249 264Right-handed alpha
Helix 13
13
A
277 287Right-handed alpha
Helix 14
14
A
290 295Right-handed alpha
Helix 15
15
A
300 310Right-handed alpha
Helix 16
16
A
321 334Right-handed alpha
Helix 17
17
A
340 349Right-handed alpha
Helix 18
18
A
354 358Right-handed 310
Helix 19
19
A
421 429Right-handed alpha
Helix 20
20
A
438 450Right-handed alpha
Helix 21
21
B
21 48Right-handed alpha
Helix 22
22
B
50 55Right-handed alpha
Helix 23
23
B
56 73Right-handed alpha
Helix 24
24
B
113 124Right-handed alpha
Helix 25
25
B
129 148Right-handed alpha
Helix 26
26
B
150 157Right-handed alpha
Helix 27
27
B
160 167Right-handed 310
Helix 28
28
B
178 184Right-handed alpha
Helix 29
29
B
185 202Right-handed alpha
Helix 30
30
B
210 230Right-handed alpha
Helix 31
31
B
232 245Right-handed alpha
Helix 32
32
B
249 263Right-handed alpha
Helix 33
33
B
277 287Right-handed alpha
Helix 34
34
B
290 295Right-handed alpha
Helix 35
35
B
300 309Right-handed alpha
Helix 36
36
B
321 334Right-handed alpha
Helix 37
37
B
340 349Right-handed alpha
Helix 38
38
B
354 358Right-handed 310
Helix 39
39
B
370 374Right-handed 310
Helix 40
40
B
421 429Right-handed alpha
Helix 41
41
B
438 450Right-handed alpha
Helix 42
42
C
21 47Right-handed alpha
Helix 43
43
C
50 55Right-handed alpha
Helix 44
44
C
56 73Right-handed alpha
Helix 45
45
C
113 124Right-handed alpha
Helix 46
46
C
129 148Right-handed alpha
Helix 47
47
C
150 157Right-handed alpha
Helix 48
48
C
160 167Right-handed 310
Helix 49
49
C
180 184Right-handed 310
Helix 50
50
C
185 201Right-handed alpha
Helix 51
51
C
203 207Right-handed 310
Helix 52
52
C
209 230Right-handed alpha
Helix 53
53
C
232 245Right-handed alpha
Helix 54
54
C
249 266Right-handed alpha
Helix 55
55
C
277 287Right-handed alpha
Helix 56
56
C
290 295Right-handed alpha
Helix 57
57
C
300 309Right-handed alpha
Helix 58
58
C
321 334Right-handed alpha
Helix 59
59
C
340 349Right-handed alpha
Helix 60
60
C
354 358Right-handed 310
Helix 61
61
C
370 374Right-handed 310
Helix 62
62
C
421 429Right-handed alpha
Helix 63
63
C
438 450Right-handed alpha
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There are 10 sheets in PDB entry 3ZDP. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, CA, CB, CC,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 92first strand
Strand 2
A
111 112anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 100first strand
Strand 2
A
103 108anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
313 316first strand
Strand 2
A
375 378anti-parallel
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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
385 390first strand
Strand 2
A
460 465anti-parallel
Strand 3
A
414 415anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
91 100first strand
Strand 2
B
103 112anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
313 316first strand
Strand 2
B
375 378anti-parallel
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There are 3 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
385 390first strand
Strand 2
B
460 465anti-parallel
Strand 3
B
414 415anti-parallel
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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
91 100first strand
Strand 2
C
103 112anti-parallel
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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
313 316first strand
Strand 2
C
375 378anti-parallel
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There are 3 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
385 390first strand
Strand 2
C
460 465anti-parallel
Strand 3
C
414 415anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il