Analysis of interatomic Contacts of Structural Units in PDB entry:
3ZDR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3ZDR entry

There are 2 chains in PDB entry 3ZDR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 459GLN 844
A
 THR 846VAL 869
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 3ZDR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
474 481Right-handed 310
Helix 2
2
A
493 499Right-handed alpha
Helix 3
3
A
500 511Right-handed alpha
Helix 4
4
A
529 544Right-handed alpha
Helix 5
5
A
553 569Right-handed alpha
Helix 6
6
A
573 578Right-handed alpha
Helix 7
7
A
610 614Right-handed 310
Helix 8
8
A
643 647Right-handed 310
Helix 9
9
A
651 672Right-handed alpha
Helix 10
10
A
676 700Right-handed alpha
Helix 11
11
A
703 725Right-handed alpha
Helix 12
12
A
727 741Right-handed alpha
Helix 13
13
A
743 761Right-handed alpha
Helix 14
14
A
776 788Right-handed alpha
Helix 15
15
A
794 813Right-handed alpha
Helix 16
16
A
819 823Right-handed 310
Helix 17
17
A
825 831Right-handed alpha
Helix 18
18
A
832 843Right-handed alpha
Helix 19
19
A
844 849Right-handed 310
Helix 20
20
A
854 868Right-handed alpha
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There are 2 sheets in PDB entry 3ZDR. Click on sheet of interest to get list of strands forming it: AA, AB,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
468 471first strand
Strand 2
A
639 642parallel
Strand 3
A
599 604parallel
Strand 4
A
547 552parallel
Strand 5
A
487 491parallel
Strand 6
A
517 521parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
617 620first strand
Strand 2
A
627 630anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il