Analysis of interatomic Contacts of Structural Units in PDB entry:
3ZF8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3ZF8 entry

There is 1 chain in PDB entry 3ZF8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 95ASN 394
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 11 helices in PDB entry 3ZF8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
100 104Right-handed 310
Helix 2
2
A
127 136Right-handed alpha
Helix 3
3
A
140 142Right-handed 310
Helix 4
4
A
153 172Right-handed alpha
Helix 5
5
A
174 178Right-handed 310
Helix 6
6
A
203 225Right-handed alpha
Helix 7
7
A
245 252Right-handed alpha
Helix 8
8
A
287 296Right-handed alpha
Helix 9
9
A
317 321Right-handed 310
Helix 10
10
A
345 350Right-handed alpha
Helix 11
11
A
363 375Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 3ZF8. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 186first strand
Strand 2
A
144 150parallel
Strand 3
A
116 122parallel
Strand 4
A
229 235parallel
Strand 5
A
340 344anti-parallel
Strand 6
A
257 268anti-parallel
Strand 7
A
273 278anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 186first strand
Strand 2
A
144 150parallel
Strand 3
A
116 122parallel
Strand 4
A
229 235parallel
Strand 5
A
340 344anti-parallel
Strand 6
A
257 268anti-parallel
Strand 7
A
379 389parallel
Strand 8
A
331 333parallel
Back to list of sheets
Back to top of page

There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
239 241first strand
Strand 2
A
379 389anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 186first strand
Strand 2
A
144 150parallel
Strand 3
A
116 122parallel
Strand 4
A
229 235parallel
Strand 5
A
340 344anti-parallel
Strand 6
A
257 268anti-parallel
Strand 7
A
379 389parallel
Strand 8
A
239 241anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
273 278first strand
Strand 2
A
257 268anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il