Analysis of interatomic Contacts of Structural Units in PDB entry:
3ZGI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3ZGI entry

There are 3 chains in PDB entry 3ZGI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 204SER 377
B
 ASN 203SER 376
C
 ASN 203SER 376
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 3 helices in PDB entry 3ZGI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
326 330Right-handed alpha
Helix 2
2
B
326 330Right-handed alpha
Helix 3
3
C
326 330Right-handed alpha
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There are 13 sheets in PDB entry 3ZGI. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD, BE, CA, CB, CC, CD,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 218first strand
Strand 2
A
223 233anti-parallel
Strand 3
A
237 245anti-parallel
Strand 4
A
334 342anti-parallel
Strand 5
A
289 294anti-parallel
Strand 6
A
300 307anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
323 325first strand
Strand 2
A
265 267anti-parallel
Strand 3
A
357 358anti-parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
277 279first strand
Strand 2
A
350 352anti-parallel
Strand 3
A
373 375anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
309 312first strand
Strand 2
A
315 318anti-parallel
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There are 12 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
300 303first strand
Strand 2
B
290 294anti-parallel
Strand 3
B
334 342anti-parallel
Strand 4
B
237 245anti-parallel
Strand 5
B
223 233anti-parallel
Strand 6
B
207 218anti-parallel
Strand 7
C
207 218anti-parallel
Strand 8
C
223 233anti-parallel
Strand 9
C
237 245anti-parallel
Strand 10
C
334 342anti-parallel
Strand 11
C
290 294anti-parallel
Strand 12
C
300 303anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
247 248first strand
Strand 2
B
253 254anti-parallel
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There are 3 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
323 325first strand
Strand 2
B
265 267anti-parallel
Strand 3
B
357 358anti-parallel
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There are 3 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
277 279first strand
Strand 2
B
350 352anti-parallel
Strand 3
B
373 375anti-parallel
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There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
309 311first strand
Strand 2
B
316 318anti-parallel
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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
247 248first strand
Strand 2
C
253 254anti-parallel
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There are 3 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
323 325first strand
Strand 2
C
265 267anti-parallel
Strand 3
C
357 358anti-parallel
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There are 3 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
277 279first strand
Strand 2
C
350 352anti-parallel
Strand 3
C
373 375anti-parallel
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There are 2 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
309 311first strand
Strand 2
C
316 318anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il