Analysis of interatomic Contacts of Structural Units in PDB entry:
3ZIZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3ZIZ entry

There is 1 chain in PDB entry 3ZIZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 4ALA 350
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 3ZIZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
28 32Right-handed 310
Helix 2
2
A
34 48Right-handed alpha
Helix 3
3
A
88 103Right-handed alpha
Helix 4
4
A
118 128Right-handed alpha
Helix 5
5
A
131 136Right-handed 310
Helix 6
6
A
137 156Right-handed alpha
Helix 7
7
A
177 195Right-handed alpha
Helix 8
8
A
215 219Right-handed 310
Helix 9
9
A
225 231Right-handed alpha
Helix 10
10
A
243 247Right-handed 310
Helix 11
11
A
250 252Right-handed 310
Helix 12
12
A
253 269Right-handed alpha
Helix 13
13
A
282 297Right-handed alpha
Helix 14
14
A
331 338Right-handed alpha
Helix 15
15
A
338 347Right-handed alpha
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There are 5 sheets in PDB entry 3ZIZ. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 8first strand
Strand 2
A
11 14anti-parallel
Strand 3
A
17 19anti-parallel
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There are 8 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 201first strand
Strand 2
A
161 165parallel
Strand 3
A
105 109parallel
Strand 4
A
52 56parallel
Strand 5
A
21 25parallel
Strand 6
A
302 307parallel
Strand 7
A
272 277parallel
Strand 8
A
238 242parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 61first strand
Strand 2
A
73 74parallel
Strand 3
A
81 82anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
310 311first strand
Strand 2
A
327 328parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
313 314first strand
Strand 2
A
317 319anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il