Analysis of interatomic Contacts of Structural Units in PDB entry:
3ZJD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3ZJD entry

There are 2 chains in PDB entry 3ZJD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 5TRP 356
B
 LEU 6GLN 357
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 3ZJD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 13Right-handed 310
Helix 2
2
A
14 28Right-handed alpha
Helix 3
3
A
42 46Right-handed 310
Helix 4
4
A
57 69Right-handed alpha
Helix 5
5
A
70 80Right-handed alpha
Helix 6
6
A
102 114Right-handed alpha
Helix 7
7
A
120 133Right-handed alpha
Helix 8
8
A
135 148Right-handed alpha
Helix 9
9
A
163 175Right-handed alpha
Helix 10
10
A
192 204Right-handed alpha
Helix 11
11
A
239 243Right-handed 310
Helix 12
12
A
292 298Right-handed alpha
Helix 13
13
A
298 307Right-handed alpha
Helix 14
14
A
336 339Right-handed 310
Helix 15
15
A
340 355Right-handed alpha
Helix 16
16
B
9 13Right-handed 310
Helix 17
17
B
14 28Right-handed alpha
Helix 18
18
B
42 46Right-handed 310
Helix 19
19
B
57 69Right-handed alpha
Helix 20
20
B
70 80Right-handed alpha
Helix 21
21
B
102 114Right-handed alpha
Helix 22
22
B
120 132Right-handed alpha
Helix 23
23
B
135 148Right-handed alpha
Helix 24
24
B
166 175Right-handed alpha
Helix 25
25
B
192 204Right-handed alpha
Helix 26
26
B
239 243Right-handed 310
Helix 27
27
B
292 297Right-handed alpha
Helix 28
28
B
298 307Right-handed alpha
Helix 29
29
B
340 356Right-handed alpha
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There are 8 sheets in PDB entry 3ZJD. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 30first strand
Strand 2
A
39 40anti-parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 94first strand
Strand 2
A
256 262anti-parallel
Strand 3
A
248 253anti-parallel
Strand 4
A
207 211parallel
Strand 5
A
231 233anti-parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
272 274first strand
Strand 2
A
322 329anti-parallel
Strand 3
A
309 315anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
276 279first strand
Strand 2
A
282 285anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 30first strand
Strand 2
B
39 40anti-parallel
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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 94first strand
Strand 2
B
256 262anti-parallel
Strand 3
B
248 253anti-parallel
Strand 4
B
207 211parallel
Strand 5
B
231 233anti-parallel
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There are 3 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
272 274first strand
Strand 2
B
322 329anti-parallel
Strand 3
B
309 315anti-parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
276 279first strand
Strand 2
B
282 285anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il