Analysis of interatomic Contacts of Structural Units in PDB entry:
3ZK8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3ZK8 entry

There are 2 chains in PDB entry 3ZK8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 32LYS 309
B
 LYS 32LYS 309
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 3ZK8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
39 51Right-handed alpha
Helix 2
2
A
72 82Right-handed alpha
Helix 3
3
A
98 107Right-handed alpha
Helix 4
4
A
127 130Right-handed 310
Helix 5
5
A
139 142Right-handed 310
Helix 6
6
A
143 162Right-handed alpha
Helix 7
7
A
165 194Right-handed alpha
Helix 8
8
A
195 199Right-handed 310
Helix 9
9
A
208 216Right-handed alpha
Helix 10
10
A
232 245Right-handed alpha
Helix 11
11
A
259 270Right-handed alpha
Helix 12
12
A
291 308Right-handed alpha
Helix 13
13
B
39 51Right-handed alpha
Helix 14
14
B
72 82Right-handed alpha
Helix 15
15
B
98 107Right-handed alpha
Helix 16
16
B
127 130Right-handed 310
Helix 17
17
B
139 142Right-handed 310
Helix 18
18
B
143 162Right-handed alpha
Helix 19
19
B
165 194Right-handed alpha
Helix 20
20
B
195 199Right-handed 310
Helix 21
21
B
208 216Right-handed alpha
Helix 22
22
B
232 245Right-handed alpha
Helix 23
23
B
259 270Right-handed alpha
Helix 24
24
B
291 308Right-handed alpha
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There are 6 sheets in PDB entry 3ZK8. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 58first strand
Strand 2
A
33 37parallel
Strand 3
A
84 87parallel
Strand 4
A
115 117parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 205first strand
Strand 2
A
219 223parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
251 254first strand
Strand 2
A
273 277parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
54 58first strand
Strand 2
B
33 37parallel
Strand 3
B
84 87parallel
Strand 4
B
115 117parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
201 205first strand
Strand 2
B
219 223parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
251 254first strand
Strand 2
B
273 277parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il