Analysis of interatomic Contacts of Structural Units in PDB entry:
3ZKP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3ZKP entry

There is 1 chain in PDB entry 3ZKP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 21ALA 411
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 3ZKP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
26 41Right-handed alpha
Helix 2
2
A
55 65Right-handed alpha
Helix 3
3
A
72 77Right-handed 310
Helix 4
4
A
86 90Right-handed 310
Helix 5
5
A
93 103Right-handed alpha
Helix 6
6
A
104 106Right-handed 310
Helix 7
7
A
107 113Right-handed alpha
Helix 8
8
A
114 128Right-handed alpha
Helix 9
9
A
135 139Right-handed alpha
Helix 10
10
A
141 152Right-handed alpha
Helix 11
11
A
155 157Right-handed 310
Helix 12
12
A
158 171Right-handed alpha
Helix 13
13
A
179 207Right-handed alpha
Helix 14
14
A
211 219Right-handed alpha
Helix 15
15
A
227 242Right-handed alpha
Helix 16
16
A
243 260Right-handed alpha
Helix 17
17
A
261 270Right-handed alpha
Helix 18
18
A
273 285Right-handed alpha
Helix 19
19
A
316 321Right-handed alpha
Helix 20
20
A
339 343Right-handed 310
Helix 21
21
A
343 347Right-handed 310
Helix 22
22
A
355 375Right-handed alpha
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There are 5 sheets in PDB entry 3ZKP. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 45first strand
Strand 2
A
51 53anti-parallel
Strand 3
A
311 315parallel
Strand 4
A
290 295anti-parallel
Strand 5
A
69 70anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 134first strand
Strand 2
A
400 403anti-parallel
Strand 3
A
377 379anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
220 221first strand
Strand 2
A
224 225anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
299 301first strand
Strand 2
A
304 306anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
387 388first strand
Strand 2
A
396 398anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il