Analysis of interatomic Contacts of Structural Units in PDB entry:
3ZM8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3ZM8 entry

There is 1 chain in PDB entry 3ZM8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 6SER 449
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 3ZM8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
148 162Right-handed alpha
Helix 2
2
A
172 184Right-handed alpha
Helix 3
3
A
195 197Right-handed 310
Helix 4
4
A
198 203Right-handed alpha
Helix 5
5
A
209 220Right-handed alpha
Helix 6
6
A
243 247Right-handed 310
Helix 7
7
A
250 252Right-handed 310
Helix 8
8
A
256 263Right-handed alpha
Helix 9
9
A
266 289Right-handed alpha
Helix 10
10
A
300 304Right-handed 310
Helix 11
11
A
307 310Right-handed 310
Helix 12
12
A
312 329Right-handed alpha
Helix 13
13
A
369 380Right-handed alpha
Helix 14
14
A
396 403Right-handed alpha
Helix 15
15
A
425 434Right-handed alpha
Helix 16
16
A
440 445Right-handed alpha
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There are 5 sheets in PDB entry 3ZM8. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 13first strand
Strand 2
A
121 129anti-parallel
Strand 3
A
57 66anti-parallel
Strand 4
A
95 104anti-parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 20first strand
Strand 2
A
46 53anti-parallel
Strand 3
A
107 114anti-parallel
Strand 4
A
72 78anti-parallel
Strand 5
A
85 88anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 25first strand
Strand 2
A
36 38anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 167first strand
Strand 2
A
438 439parallel
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There are 9 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 171first strand
Strand 2
A
189 193parallel
Strand 3
A
223 227parallel
Strand 4
A
293 296parallel
Strand 5
A
336 340parallel
Strand 6
A
356 361parallel
Strand 7
A
385 391parallel
Strand 8
A
410 412parallel
Strand 9
A
169 171parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il