Analysis of interatomic Contacts of Structural Units in PDB entry:
3ZMD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3ZMD entry

There are 4 chains in PDB entry 3ZMD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 7GLN 154
B
 THR 7GLN 154
C
 ALA 6GLN 154
D
 THR 7GLN 154
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 3ZMD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 37Right-handed alpha
Helix 2
2
A
38 40Right-handed 310
Helix 3
3
A
42 54Right-handed alpha
Helix 4
4
A
55 57Right-handed 310
Helix 5
5
A
62 69Right-handed alpha
Helix 6
6
A
72 86Right-handed alpha
Helix 7
7
A
106 128Right-handed alpha
Helix 8
8
A
129 132Right-handed 310
Helix 9
9
A
133 154Right-handed alpha
Helix 10
10
B
11 37Right-handed alpha
Helix 11
11
B
38 40Right-handed 310
Helix 12
12
B
42 54Right-handed alpha
Helix 13
13
B
55 57Right-handed 310
Helix 14
14
B
62 69Right-handed alpha
Helix 15
15
B
72 86Right-handed alpha
Helix 16
16
B
106 128Right-handed alpha
Helix 17
17
B
129 132Right-handed 310
Helix 18
18
B
133 154Right-handed alpha
Helix 19
19
C
11 37Right-handed alpha
Helix 20
20
C
38 40Right-handed 310
Helix 21
21
C
42 54Right-handed alpha
Helix 22
22
C
55 57Right-handed 310
Helix 23
23
C
62 69Right-handed alpha
Helix 24
24
C
72 86Right-handed alpha
Helix 25
25
C
106 128Right-handed alpha
Helix 26
26
C
129 132Right-handed 310
Helix 27
27
C
133 154Right-handed alpha
Helix 28
28
D
11 37Right-handed alpha
Helix 29
29
D
38 40Right-handed 310
Helix 30
30
D
42 54Right-handed alpha
Helix 31
31
D
55 57Right-handed 310
Helix 32
32
D
62 69Right-handed alpha
Helix 33
33
D
72 86Right-handed alpha
Helix 34
34
D
106 128Right-handed alpha
Helix 35
35
D
129 132Right-handed 310
Helix 36
36
D
133 154Right-handed alpha
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There are 4 sheets in PDB entry 3ZMD. Click on sheet of interest to get list of strands forming it: AA, BA, CA, A,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 61first strand
Strand 2
A
102 105anti-parallel
Strand 3
A
89 92anti-parallel
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There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 61first strand
Strand 2
B
102 105anti-parallel
Strand 3
B
89 92anti-parallel
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There are 3 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
59 61first strand
Strand 2
C
101 105anti-parallel
Strand 3
C
89 93anti-parallel
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There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
59 61first strand
Strand 2
D
101 105anti-parallel
Strand 3
D
89 93anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il