Analysis of interatomic Contacts of Structural Units in PDB entry:
3ZMK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3ZMK entry

There are 4 chains in PDB entry 3ZMK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3ALA 221
B
 SER -1LYS 220
C
 LYS 3LYS 220
D
 MET 1ALA 221
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 41 helices in PDB entry 3ZMK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 25Right-handed alpha
Helix 2
2
A
67 80Right-handed alpha
Helix 3
3
A
89 106Right-handed alpha
Helix 4
4
A
106 121Right-handed alpha
Helix 5
5
A
127 145Right-handed alpha
Helix 6
6
A
156 170Right-handed alpha
Helix 7
7
A
180 192Right-handed alpha
Helix 8
8
A
195 200Right-handed alpha
Helix 9
9
A
200 220Right-handed alpha
Helix 10
10
B
12 26Right-handed alpha
Helix 11
11
B
39 42Right-handed 310
Helix 12
12
B
43 50Right-handed alpha
Helix 13
13
B
67 80Right-handed alpha
Helix 14
14
B
89 106Right-handed alpha
Helix 15
15
B
106 121Right-handed alpha
Helix 16
16
B
127 145Right-handed alpha
Helix 17
17
B
156 170Right-handed alpha
Helix 18
18
B
180 192Right-handed alpha
Helix 19
19
B
195 200Right-handed alpha
Helix 20
20
B
200 220Right-handed alpha
Helix 21
21
C
12 25Right-handed alpha
Helix 22
22
C
67 80Right-handed alpha
Helix 23
23
C
89 106Right-handed alpha
Helix 24
24
C
106 120Right-handed alpha
Helix 25
25
C
127 145Right-handed alpha
Helix 26
26
C
156 170Right-handed alpha
Helix 27
27
C
180 191Right-handed alpha
Helix 28
28
C
195 200Right-handed alpha
Helix 29
29
C
200 219Right-handed alpha
Helix 30
30
D
12 25Right-handed alpha
Helix 31
31
D
35 39Right-handed 310
Helix 32
32
D
39 42Right-handed 310
Helix 33
33
D
43 50Right-handed alpha
Helix 34
34
D
67 80Right-handed alpha
Helix 35
35
D
89 106Right-handed alpha
Helix 36
36
D
106 121Right-handed alpha
Helix 37
37
D
127 145Right-handed alpha
Helix 38
38
D
156 170Right-handed alpha
Helix 39
39
D
180 192Right-handed alpha
Helix 40
40
D
195 200Right-handed alpha
Helix 41
41
D
200 219Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 3ZMK. Click on sheet of interest to get list of strands forming it: AA, BA, CA, A,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 33first strand
Strand 2
A
4 8parallel
Strand 3
A
57 60anti-parallel
Strand 4
A
63 66anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 33first strand
Strand 2
B
4 8parallel
Strand 3
B
57 60anti-parallel
Strand 4
B
63 66anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
29 32first strand
Strand 2
C
4 7parallel
Strand 3
C
57 60anti-parallel
Strand 4
C
63 66anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
29 33first strand
Strand 2
D
4 8parallel
Strand 3
D
57 60anti-parallel
Strand 4
D
63 66anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il