Analysis of interatomic Contacts of Structural Units in PDB entry:
3ZMP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3ZMP entry

There are 6 chains in PDB entry 3ZMP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 3MET 282
B
 ILE 10PHE 280
C
 GLU 1GLN 3
C
 GLN 5ASN 9
D
 GLN 3GLN 3
D
 GLN 5GLN 5
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 3ZMP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 14Right-handed alpha
Helix 2
2
A
15 27Right-handed alpha
Helix 3
3
A
37 44Right-handed 310
Helix 4
4
A
91 102Right-handed alpha
Helix 5
5
A
187 201Right-handed alpha
Helix 6
6
A
219 238Right-handed alpha
Helix 7
7
A
240 244Right-handed 310
Helix 8
8
A
245 257Right-handed alpha
Helix 9
9
A
263 282Right-handed alpha
Helix 10
10
B
15 27Right-handed alpha
Helix 11
11
B
37 44Right-handed 310
Helix 12
12
B
91 102Right-handed alpha
Helix 13
13
B
187 201Right-handed alpha
Helix 14
14
B
219 238Right-handed alpha
Helix 15
15
B
240 244Right-handed 310
Helix 16
16
B
245 257Right-handed alpha
Helix 17
17
B
263 278Right-handed alpha
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There are 2 sheets in PDB entry 3ZMP. Click on sheet of interest to get list of strands forming it: AA, BA,

There are 9 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 58first strand
Strand 2
A
66 74anti-parallel
Strand 3
A
79 85anti-parallel
Strand 4
A
211 215parallel
Strand 5
A
106 109parallel
Strand 6
A
167 176parallel
Strand 7
A
153 162anti-parallel
Strand 8
A
140 149anti-parallel
Strand 9
A
133 135anti-parallel
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There are 9 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 58first strand
Strand 2
B
66 74anti-parallel
Strand 3
B
79 84anti-parallel
Strand 4
B
211 214parallel
Strand 5
B
106 109parallel
Strand 6
B
167 176parallel
Strand 7
B
153 162anti-parallel
Strand 8
B
140 149anti-parallel
Strand 9
B
133 135anti-parallel
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