Analysis of interatomic Contacts of Structural Units in PDB entry:
3ZO0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3ZO0 entry

There are 2 chains in PDB entry 3ZO0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 237SER 444
B
 HIS 7LEU 186
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 3ZO0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
246 252Right-handed alpha
Helix 2
2
A
309 315Right-handed alpha
Helix 3
3
A
354 359Right-handed 310
Helix 4
4
A
414 419Right-handed alpha
Helix 5
5
A
432 434Right-handed 310
Helix 6
6
B
14 18Right-handed 310
Helix 7
7
B
94 97Right-handed 310
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There are 8 sheets in PDB entry 3ZO0. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, BA, BB,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
239 243first strand
Strand 2
A
258 266anti-parallel
Strand 3
A
299 307anti-parallel
Strand 4
A
288 295anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
282 284first strand
Strand 2
A
274 279anti-parallel
Strand 3
A
319 324anti-parallel
Strand 4
A
332 336anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 351first strand
Strand 2
A
362 372anti-parallel
Strand 3
A
404 413anti-parallel
Strand 4
A
397 398parallel
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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 351first strand
Strand 2
A
362 372anti-parallel
Strand 3
A
404 413anti-parallel
Strand 4
A
391 393anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
397 398first strand
Strand 2
A
404 413parallel
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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
386 387first strand
Strand 2
A
378 383anti-parallel
Strand 3
A
423 428anti-parallel
Strand 4
A
436 441anti-parallel
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There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 24first strand
Strand 2
B
30 33anti-parallel
Strand 3
B
181 183anti-parallel
Strand 4
B
63 69anti-parallel
Strand 5
B
127 133anti-parallel
Strand 6
B
138 143anti-parallel
Strand 7
B
149 154anti-parallel
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There are 6 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 54first strand
Strand 2
B
163 168anti-parallel
Strand 3
B
76 82anti-parallel
Strand 4
B
99 105anti-parallel
Strand 5
B
108 111anti-parallel
Strand 6
B
117 118anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il