Analysis of interatomic Contacts of Structural Units in PDB entry:
3ZQB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3ZQB entry

There are 2 chains in PDB entry 3ZQB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 6THR 336
B
 TYR 8PHE 340
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 3ZQB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 37Right-handed alpha
Helix 2
2
A
40 62Right-handed alpha
Helix 3
3
A
63 76Right-handed alpha
Helix 4
4
A
130 140Right-handed alpha
Helix 5
5
A
142 172Right-handed alpha
Helix 6
6
A
173 178Right-handed 310
Helix 7
7
A
190 205Right-handed alpha
Helix 8
8
A
227 238Right-handed alpha
Helix 9
9
A
241 243Right-handed 310
Helix 10
10
A
258 272Right-handed alpha
Helix 11
11
A
283 333Right-handed alpha
Helix 12
12
B
8 37Right-handed alpha
Helix 13
13
B
40 63Right-handed alpha
Helix 14
14
B
63 70Right-handed alpha
Helix 15
15
B
148 172Right-handed alpha
Helix 16
16
B
173 176Right-handed 310
Helix 17
17
B
182 184Right-handed 310
Helix 18
18
B
190 206Right-handed alpha
Helix 19
19
B
227 239Right-handed alpha
Helix 20
20
B
241 243Right-handed 310
Helix 21
21
B
258 270Right-handed alpha
Helix 22
22
B
284 339Right-handed alpha
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There are 4 sheets in PDB entry 3ZQB. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 189first strand
Strand 2
A
280 282anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
213 215first strand
Strand 2
A
251 255anti-parallel
Strand 3
A
245 248anti-parallel
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There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
178 180first strand
Strand 2
B
186 189anti-parallel
Strand 3
B
280 283anti-parallel
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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
213 215first strand
Strand 2
B
251 255anti-parallel
Strand 3
B
245 248anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il