Analysis of interatomic Contacts of Structural Units in PDB entry:
3ZQM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3ZQM entry

There are 10 chains in PDB entry 3ZQM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 62ALA 120
B
 LYS 65ALA 120
C
 LYS 65ALA 120
D
 LYS 65ALA 120
E
 GLU 64ALA 120
F
 LYS 65ALA 120
G
 ILE 62ALA 120
H
 LYS 66ALA 120
I
 ASN 63ALA 120
J
 LYS 65ALA 120
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 20 helices in PDB entry 3ZQM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
69 82Right-handed alpha
Helix 2
2
A
106 120Right-handed alpha
Helix 3
3
B
69 82Right-handed alpha
Helix 4
4
B
106 120Right-handed alpha
Helix 5
5
C
69 82Right-handed alpha
Helix 6
6
C
106 120Right-handed alpha
Helix 7
7
D
69 82Right-handed alpha
Helix 8
8
D
106 119Right-handed alpha
Helix 9
9
E
69 82Right-handed alpha
Helix 10
10
E
106 120Right-handed alpha
Helix 11
11
F
69 82Right-handed alpha
Helix 12
12
F
106 120Right-handed alpha
Helix 13
13
G
69 82Right-handed alpha
Helix 14
14
G
106 120Right-handed alpha
Helix 15
15
H
69 82Right-handed alpha
Helix 16
16
H
106 120Right-handed alpha
Helix 17
17
I
69 82Right-handed alpha
Helix 18
18
I
106 120Right-handed alpha
Helix 19
19
J
69 82Right-handed alpha
Helix 20
20
J
106 120Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 3ZQM. Click on sheet of interest to get list of strands forming it: AA, BA, CA, A, EA, FA, GA, HA, IA, JA,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 94first strand
Strand 2
A
97 104anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
86 94first strand
Strand 2
B
97 104anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
86 94first strand
Strand 2
C
97 104anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
86 94first strand
Strand 2
D
97 104anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
86 94first strand
Strand 2
E
97 104anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
86 94first strand
Strand 2
F
97 104anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in GA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
86 94first strand
Strand 2
G
97 104anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in HA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
86 94first strand
Strand 2
H
97 104anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in IA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
86 94first strand
Strand 2
I
97 104anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in JA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
86 94first strand
Strand 2
J
97 104anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il