Analysis of interatomic Contacts of Structural Units in PDB entry:
3ZRY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3ZRY entry

There are 19 chains in PDB entry 3ZRY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 26	PHE 510
B	ALA 25	PHE 510
C	ASN 26	PHE 510
D	SER 6	GLU 476
E	PRO 8	GLU 476
F	THR 7	GLU 476
G	ALA 1	LEU 277
H	LEU 12	VAL 136
I	MET 8	LYS 61
J	GLN 2	PHE 74
K	LEU 3	GLY 75
L	GLN 2	LEU 73
M	MET 1	LEU 73
N	MET 1	LEU 73
O	MET 1	PHE 74
P	MET 1	GLY 75
Q	MET 1	GLY 75
R	MET 1	PHE 74
S	MET 1	PHE 74

There are169 helices in PDB entry 3ZRY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	80	84	Right-handed 310
Helix 2	2	A	152	159	Right-handed alpha
Helix 3	3	A	176	187	Right-handed alpha
Helix 4	4	A	188	193	Right-handed alpha
Helix 5	5	A	196	200	Right-handed 310
Helix 6	6	A	211	223	Right-handed alpha
Helix 7	7	A	224	226	Right-handed 310
Helix 8	8	A	227	229	Right-handed 310
Helix 9	9	A	241	262	Right-handed alpha
Helix 10	10	A	272	287	Right-handed alpha
Helix 11	11	A	292	296	Right-handed 310
Helix 12	12	A	299	310	Right-handed alpha
Helix 13	13	A	315	319	Right-handed 310
Helix 14	14	A	338	346	Right-handed alpha
Helix 15	15	A	355	362	Right-handed alpha
Helix 16	16	A	376	381	Right-handed 310
Helix 17	17	A	382	388	Right-handed alpha
Helix 18	18	A	391	402	Right-handed alpha
Helix 19	19	A	403	407	Right-handed 310
Helix 20	20	A	413	430	Right-handed alpha
Helix 21	21	A	439	452	Right-handed alpha
Helix 22	22	A	462	489	Right-handed alpha
Helix 23	23	A	492	509	Right-handed alpha
Helix 24	24	B	80	84	Right-handed 310
Helix 25	25	B	102	106	Right-handed 310
Helix 26	26	B	152	159	Right-handed alpha
Helix 27	27	B	176	188	Right-handed alpha
Helix 28	28	B	188	193	Right-handed alpha
Helix 29	29	B	211	224	Right-handed alpha
Helix 30	30	B	241	262	Right-handed alpha
Helix 31	31	B	272	287	Right-handed alpha
Helix 32	32	B	292	296	Right-handed 310
Helix 33	33	B	299	309	Right-handed alpha
Helix 34	34	B	315	319	Right-handed 310
Helix 35	35	B	338	346	Right-handed alpha
Helix 36	36	B	355	361	Right-handed alpha
Helix 37	37	B	368	372	Right-handed 310
Helix 38	38	B	382	389	Right-handed alpha
Helix 39	39	B	391	398	Right-handed alpha
Helix 40	40	B	399	404	Right-handed alpha
Helix 41	41	B	417	431	Right-handed alpha
Helix 42	42	B	439	452	Right-handed alpha
Helix 43	43	B	459	461	Right-handed 310
Helix 44	44	B	462	475	Right-handed alpha
Helix 45	45	B	478	488	Right-handed alpha
Helix 46	46	B	492	500	Right-handed alpha
Helix 47	47	B	503	509	Right-handed alpha
Helix 48	48	C	102	106	Right-handed 310
Helix 49	49	C	152	159	Right-handed alpha
Helix 50	50	C	176	188	Right-handed alpha
Helix 51	51	C	188	193	Right-handed alpha
Helix 52	52	C	211	225	Right-handed alpha
Helix 53	53	C	227	229	Right-handed 310
Helix 54	54	C	241	262	Right-handed alpha
Helix 55	55	C	272	288	Right-handed alpha
Helix 56	56	C	292	296	Right-handed 310
Helix 57	57	C	299	309	Right-handed alpha
Helix 58	58	C	315	319	Right-handed 310
Helix 59	59	C	338	348	Right-handed alpha
Helix 60	60	C	355	361	Right-handed alpha
Helix 61	61	C	376	381	Right-handed 310
Helix 62	62	C	382	389	Right-handed alpha
Helix 63	63	C	391	406	Right-handed alpha
Helix 64	64	C	407	409	Right-handed 310
Helix 65	65	C	415	430	Right-handed alpha
Helix 66	66	C	439	452	Right-handed alpha
Helix 67	67	C	462	477	Right-handed alpha
Helix 68	68	C	478	489	Right-handed alpha
Helix 69	69	C	492	508	Right-handed alpha
Helix 70	70	D	88	92	Right-handed 310
Helix 71	71	D	123	126	Right-handed 310
Helix 72	72	D	138	145	Right-handed alpha
Helix 73	73	D	162	178	Right-handed alpha
Helix 74	74	D	190	205	Right-handed alpha
Helix 75	75	D	225	230	Right-handed alpha
Helix 76	76	D	231	246	Right-handed alpha
Helix 77	77	D	258	270	Right-handed alpha
Helix 78	78	D	277	281	Right-handed 310
Helix 79	79	D	284	294	Right-handed alpha
Helix 80	80	D	313	316	Right-handed 310
Helix 81	81	D	319	326	Right-handed alpha
Helix 82	82	D	327	329	Right-handed 310
Helix 83	83	D	336	342	Right-handed alpha
Helix 84	84	D	359	364	Right-handed alpha
Helix 85	85	D	364	392	Right-handed alpha
Helix 86	86	D	397	414	Right-handed alpha
Helix 87	87	D	421	426	Right-handed alpha
Helix 88	88	D	433	446	Right-handed alpha
Helix 89	89	D	453	458	Right-handed 310
Helix 90	90	D	462	475	Right-handed alpha
Helix 91	91	E	88	92	Right-handed 310
Helix 92	92	E	138	145	Right-handed alpha
Helix 93	93	E	162	177	Right-handed alpha
Helix 94	94	E	190	204	Right-handed alpha
Helix 95	95	E	225	246	Right-handed alpha
Helix 96	96	E	257	272	Right-handed alpha
Helix 97	97	E	277	281	Right-handed 310
Helix 98	98	E	284	294	Right-handed alpha
Helix 99	99	E	312	316	Right-handed 310
Helix 100	100	E	319	327	Right-handed alpha
Helix 101	101	E	336	342	Right-handed alpha
Helix 102	102	E	359	364	Right-handed alpha
Helix 103	103	E	364	392	Right-handed alpha
Helix 104	104	E	397	414	Right-handed alpha
Helix 105	105	E	421	426	Right-handed alpha
Helix 106	106	E	433	446	Right-handed alpha
Helix 107	107	E	463	474	Right-handed alpha
Helix 108	108	F	88	92	Right-handed 310
Helix 109	109	F	138	145	Right-handed alpha
Helix 110	110	F	162	177	Right-handed alpha
Helix 111	111	F	190	205	Right-handed alpha
Helix 112	112	F	225	230	Right-handed alpha
Helix 113	113	F	231	246	Right-handed alpha
Helix 114	114	F	258	270	Right-handed alpha
Helix 115	115	F	277	281	Right-handed 310
Helix 116	116	F	284	294	Right-handed alpha
Helix 117	117	F	313	316	Right-handed 310
Helix 118	118	F	319	327	Right-handed alpha
Helix 119	119	F	336	342	Right-handed alpha
Helix 120	120	F	359	364	Right-handed alpha
Helix 121	121	F	364	391	Right-handed alpha
Helix 122	122	F	392	396	Right-handed 310
Helix 123	123	F	397	415	Right-handed alpha
Helix 124	124	F	421	426	Right-handed alpha
Helix 125	125	F	433	446	Right-handed alpha
Helix 126	126	F	453	458	Right-handed 310
Helix 127	127	F	462	474	Right-handed alpha
Helix 128	128	G	2	37	Right-handed alpha
Helix 129	129	G	43	56	Right-handed alpha
Helix 130	130	G	86	98	Right-handed alpha
Helix 131	131	G	111	120	Right-handed alpha
Helix 132	132	G	139	153	Right-handed alpha
Helix 133	133	G	185	189	Right-handed 310
Helix 134	134	G	193	197	Right-handed 310
Helix 135	135	G	204	276	Right-handed alpha
Helix 136	136	H	99	114	Right-handed alpha
Helix 137	137	H	120	135	Right-handed alpha
Helix 138	138	I	12	17	Right-handed alpha
Helix 139	139	I	32	38	Right-handed alpha
Helix 140	140	J	2	15	Right-handed alpha
Helix 141	141	J	18	38	Right-handed alpha
Helix 142	142	J	46	72	Right-handed alpha
Helix 143	143	K	5	15	Right-handed alpha
Helix 144	144	K	18	37	Right-handed alpha
Helix 145	145	K	46	72	Right-handed alpha
Helix 146	146	L	2	15	Right-handed alpha
Helix 147	147	L	18	38	Right-handed alpha
Helix 148	148	L	46	72	Right-handed alpha
Helix 149	149	M	2	15	Right-handed alpha
Helix 150	150	M	18	38	Right-handed alpha
Helix 151	151	M	46	72	Right-handed alpha
Helix 152	152	N	2	15	Right-handed alpha
Helix 153	153	N	18	38	Right-handed alpha
Helix 154	154	N	46	72	Right-handed alpha
Helix 155	155	O	1	15	Right-handed alpha
Helix 156	156	O	18	38	Right-handed alpha
Helix 157	157	O	46	72	Right-handed alpha
Helix 158	158	P	1	15	Right-handed alpha
Helix 159	159	P	18	38	Right-handed alpha
Helix 160	160	P	46	72	Right-handed alpha
Helix 161	161	Q	2	15	Right-handed alpha
Helix 162	162	Q	18	38	Right-handed alpha
Helix 163	163	Q	46	72	Right-handed alpha
Helix 164	164	R	1	15	Right-handed alpha
Helix 165	165	R	18	38	Right-handed alpha
Helix 166	166	R	46	72	Right-handed alpha
Helix 167	167	S	1	15	Right-handed alpha
Helix 168	168	S	18	38	Right-handed alpha
Helix 169	169	S	46	72	Right-handed alpha

There are 28 sheets in PDB entry 3ZRY. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, BA, BB, BC, BD, BE, BF, CA, CB, A, DB, EA, EB, EC, ED, FA, FB, FC, GA, HA, HB, HC, IA,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	37	first strand
Strand 2	A	89	96	anti-parallel
Strand 3	A	53	57	parallel
Strand 4	A	62	68	anti-parallel
Strand 5	A	72	77	anti-parallel
Strand 6	A	40	45	parallel
Strand 7	A	30	37	parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	101	first strand
Strand 2	A	127	130	anti-parallel

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There are 6 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	111	first strand
Strand 2	A	231	236	parallel
Strand 3	A	202	208	parallel
Strand 4	A	265	271	parallel
Strand 5	A	322	330	parallel
Strand 6	A	312	313	anti-parallel

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There are 8 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	111	first strand
Strand 2	A	231	236	parallel
Strand 3	A	202	208	parallel
Strand 4	A	265	271	parallel
Strand 5	A	322	330	parallel
Strand 6	A	168	171	parallel
Strand 7	A	350	354	parallel
Strand 8	A	367	374	anti-parallel

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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	312	313	first strand
Strand 2	A	322	330	anti-parallel

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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	147	148	first strand
Strand 2	A	161	162	anti-parallel

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There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	37	first strand
Strand 2	B	89	96	anti-parallel
Strand 3	B	53	57	anti-parallel
Strand 4	B	62	68	anti-parallel
Strand 5	B	72	77	anti-parallel
Strand 6	B	40	45	anti-parallel
Strand 7	B	30	37	anti-parallel

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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	101	first strand
Strand 2	B	127	130	anti-parallel

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There are 6 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	109	110	first strand
Strand 2	B	231	236	parallel
Strand 3	B	201	208	parallel
Strand 4	B	265	271	parallel
Strand 5	B	326	330	parallel
Strand 6	B	169	171	parallel

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There are 5 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	109	110	first strand
Strand 2	B	231	236	parallel
Strand 3	B	201	208	parallel
Strand 4	B	265	271	parallel
Strand 5	B	322	323	anti-parallel

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There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	147	148	first strand
Strand 2	B	161	162	anti-parallel

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There are 2 strands in BF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	350	351	first strand
Strand 2	B	373	374	anti-parallel

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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	101	first strand
Strand 2	C	127	130	anti-parallel

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There are 7 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	109	111	first strand
Strand 2	C	231	236	parallel
Strand 3	C	202	208	parallel
Strand 4	C	265	271	parallel
Strand 5	C	322	330	parallel
Strand 6	C	168	171	parallel
Strand 7	C	351	354	parallel

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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	84	86	first strand
Strand 2	D	114	116	anti-parallel

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There are 8 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	95	96	first strand
Strand 2	D	215	220	parallel
Strand 3	D	181	187	parallel
Strand 4	D	250	256	parallel
Strand 5	D	303	311	parallel
Strand 6	D	152	157	parallel
Strand 7	D	331	334	parallel
Strand 8	D	354	355	anti-parallel

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There are 7 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	17	first strand
Strand 2	E	75	78	anti-parallel
Strand 3	E	36	40	anti-parallel
Strand 4	E	45	55	anti-parallel
Strand 5	E	58	63	anti-parallel
Strand 6	E	20	24	anti-parallel
Strand 7	E	10	17	anti-parallel

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There are 2 strands in EB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	84	86	first strand
Strand 2	E	114	116	anti-parallel

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There are 7 strands in EC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	95	96	first strand
Strand 2	E	215	221	parallel
Strand 3	E	182	189	parallel
Strand 4	E	250	256	parallel
Strand 5	E	303	309	parallel
Strand 6	E	152	156	parallel
Strand 7	E	331	334	parallel

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There are 2 strands in ED sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	133	134	first strand
Strand 2	E	147	148	anti-parallel

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There are 7 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	9	17	first strand
Strand 2	F	75	78	anti-parallel
Strand 3	F	36	40	anti-parallel
Strand 4	F	45	55	anti-parallel
Strand 5	F	58	63	anti-parallel
Strand 6	F	20	25	anti-parallel
Strand 7	F	9	17	anti-parallel

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There are 2 strands in FB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	84	86	first strand
Strand 2	F	114	116	anti-parallel

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There are 8 strands in FC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	95	96	first strand
Strand 2	F	217	220	parallel
Strand 3	F	181	187	parallel
Strand 4	F	251	256	parallel
Strand 5	F	304	311	parallel
Strand 6	F	152	157	parallel
Strand 7	F	331	335	parallel
Strand 8	F	354	355	anti-parallel

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There are 5 strands in GA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	126	130	first strand
Strand 2	G	106	110	parallel
Strand 3	G	72	77	parallel
Strand 4	G	161	168	parallel
Strand 5	G	176	182	anti-parallel

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There are 2 strands in HA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	30	33	first strand
Strand 2	H	38	41	anti-parallel

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There are 3 strands in HB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	49	52	first strand
Strand 2	H	73	77	anti-parallel
Strand 3	H	83	86	anti-parallel

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There are 2 strands in HC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	57	59	first strand
Strand 2	H	66	68	anti-parallel

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There are 2 strands in IA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	43	45	first strand
Strand 2	I	58	60	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3ZRY

Analysis of interatomic Contacts of Structural Units in PDB entry:
3ZRY