Analysis of interatomic Contacts of Structural Units in PDB entry:
3ZVJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3ZVJ entry

There are 20 chains in PDB entry 3ZVJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	HIS 165
B	THR 0	HIS 165
C	SER -1	ASN 172
D	MET 1	VAL 168
E	LEU 3	ASN 172
F	GLY -2	CYS 169
G	MET 1	ASN 172
H	MET 1	VAL 171
I	MET 1	GLU 167
J	MET 1	VAL 171
K	THR 0	CYS 169
L	THR 0	PRO 170
M	GLY -2	VAL 168
N	LEU 3	GLU 167
O	THR 0	GLU 167
P	THR 0	GLY 166
Q	MET 1	HIS 165
R	GLY -2	GLY 166
S	GLY -2	CYS 169
T	THR 0	CYS 169

There are119 helices in PDB entry 3ZVJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	28	31	Right-handed 310
Helix 2	2	A	49	58	Right-handed alpha
Helix 3	3	A	58	65	Right-handed alpha
Helix 4	4	A	76	86	Right-handed alpha
Helix 5	5	A	87	91	Right-handed 310
Helix 6	6	A	106	112	Right-handed alpha
Helix 7	7	A	148	162	Right-handed alpha
Helix 8	8	B	28	31	Right-handed 310
Helix 9	9	B	49	59	Right-handed alpha
Helix 10	10	B	59	65	Right-handed alpha
Helix 11	11	B	76	86	Right-handed alpha
Helix 12	12	B	106	112	Right-handed alpha
Helix 13	13	B	148	165	Right-handed alpha
Helix 14	14	C	48	58	Right-handed alpha
Helix 15	15	C	59	65	Right-handed alpha
Helix 16	16	C	76	86	Right-handed alpha
Helix 17	17	C	106	113	Right-handed alpha
Helix 18	18	C	148	165	Right-handed alpha
Helix 19	19	D	48	58	Right-handed alpha
Helix 20	20	D	59	64	Right-handed alpha
Helix 21	21	D	76	86	Right-handed alpha
Helix 22	22	D	87	91	Right-handed 310
Helix 23	23	D	148	166	Right-handed alpha
Helix 24	24	E	50	58	Right-handed alpha
Helix 25	25	E	58	64	Right-handed alpha
Helix 26	26	E	76	86	Right-handed alpha
Helix 27	27	E	148	166	Right-handed alpha
Helix 28	28	F	52	58	Right-handed alpha
Helix 29	29	F	58	65	Right-handed alpha
Helix 30	30	F	76	86	Right-handed alpha
Helix 31	31	F	106	112	Right-handed alpha
Helix 32	32	F	148	165	Right-handed alpha
Helix 33	33	G	28	31	Right-handed 310
Helix 34	34	G	49	58	Right-handed alpha
Helix 35	35	G	58	64	Right-handed alpha
Helix 36	36	G	76	86	Right-handed alpha
Helix 37	37	G	87	91	Right-handed 310
Helix 38	38	G	106	112	Right-handed alpha
Helix 39	39	G	148	165	Right-handed alpha
Helix 40	40	H	50	55	Right-handed alpha
Helix 41	41	H	58	65	Right-handed alpha
Helix 42	42	H	76	85	Right-handed alpha
Helix 43	43	H	87	91	Right-handed 310
Helix 44	44	H	106	112	Right-handed alpha
Helix 45	45	H	148	166	Right-handed alpha
Helix 46	46	I	26	31	Right-handed 310
Helix 47	47	I	49	58	Right-handed alpha
Helix 48	48	I	59	65	Right-handed alpha
Helix 49	49	I	76	84	Right-handed alpha
Helix 50	50	I	106	112	Right-handed alpha
Helix 51	51	I	148	162	Right-handed alpha
Helix 52	52	J	28	31	Right-handed 310
Helix 53	53	J	51	58	Right-handed alpha
Helix 54	54	J	58	65	Right-handed alpha
Helix 55	55	J	76	86	Right-handed alpha
Helix 56	56	J	106	111	Right-handed alpha
Helix 57	57	J	148	165	Right-handed alpha
Helix 58	58	K	27	31	Right-handed alpha
Helix 59	59	K	51	58	Right-handed alpha
Helix 60	60	K	59	64	Right-handed alpha
Helix 61	61	K	76	86	Right-handed alpha
Helix 62	62	K	107	112	Right-handed alpha
Helix 63	63	K	148	165	Right-handed alpha
Helix 64	64	L	28	30	Right-handed 310
Helix 65	65	L	51	57	Right-handed alpha
Helix 66	66	L	59	64	Right-handed alpha
Helix 67	67	L	76	85	Right-handed alpha
Helix 68	68	L	87	91	Right-handed 310
Helix 69	69	L	106	112	Right-handed alpha
Helix 70	70	L	148	166	Right-handed alpha
Helix 71	71	M	28	30	Right-handed 310
Helix 72	72	M	51	58	Right-handed alpha
Helix 73	73	M	58	64	Right-handed alpha
Helix 74	74	M	76	83	Right-handed alpha
Helix 75	75	M	87	91	Right-handed 310
Helix 76	76	M	106	112	Right-handed alpha
Helix 77	77	M	148	163	Right-handed alpha
Helix 78	78	N	28	31	Right-handed 310
Helix 79	79	N	51	58	Right-handed alpha
Helix 80	80	N	58	65	Right-handed alpha
Helix 81	81	N	76	86	Right-handed alpha
Helix 82	82	N	106	112	Right-handed alpha
Helix 83	83	N	148	166	Right-handed alpha
Helix 84	84	O	27	31	Right-handed alpha
Helix 85	85	O	51	56	Right-handed alpha
Helix 86	86	O	58	65	Right-handed alpha
Helix 87	87	O	76	86	Right-handed alpha
Helix 88	88	O	87	91	Right-handed 310
Helix 89	89	O	106	112	Right-handed alpha
Helix 90	90	O	148	166	Right-handed alpha
Helix 91	91	P	28	31	Right-handed 310
Helix 92	92	P	52	58	Right-handed alpha
Helix 93	93	P	58	65	Right-handed alpha
Helix 94	94	P	76	86	Right-handed alpha
Helix 95	95	P	88	91	Right-handed 310
Helix 96	96	P	106	113	Right-handed alpha
Helix 97	97	P	148	166	Right-handed alpha
Helix 98	98	Q	27	31	Right-handed alpha
Helix 99	99	Q	53	65	Right-handed alpha
Helix 100	100	Q	76	86	Right-handed alpha
Helix 101	101	Q	87	91	Right-handed 310
Helix 102	102	Q	106	112	Right-handed alpha
Helix 103	103	Q	149	165	Right-handed alpha
Helix 104	104	R	28	31	Right-handed 310
Helix 105	105	R	53	57	Right-handed 310
Helix 106	106	R	58	65	Right-handed alpha
Helix 107	107	R	76	86	Right-handed alpha
Helix 108	108	R	106	112	Right-handed alpha
Helix 109	109	R	148	160	Right-handed alpha
Helix 110	110	S	52	58	Right-handed alpha
Helix 111	111	S	58	65	Right-handed alpha
Helix 112	112	S	76	86	Right-handed alpha
Helix 113	113	S	106	113	Right-handed alpha
Helix 114	114	S	149	165	Right-handed alpha
Helix 115	115	T	26	30	Right-handed 310
Helix 116	116	T	50	58	Right-handed alpha
Helix 117	117	T	59	64	Right-handed alpha
Helix 118	118	T	76	86	Right-handed alpha
Helix 119	119	T	148	165	Right-handed alpha

There are 27 sheets in PDB entry 3ZVJ. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, CA, EA, FA, GA, GB, IA, IB, JA, KA, LA, MA, NA, OA, OB, PA, QA, QB, SA, SB, SC, TA, SD, SE,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	13	17	first strand
Strand 2	A	22	26	anti-parallel

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There are 12 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	102	first strand
Strand 2	A	67	73	parallel
Strand 3	A	34	39	parallel
Strand 4	A	125	129	anti-parallel
Strand 5	A	135	140	anti-parallel
Strand 6	B	134	141	anti-parallel
Strand 7	B	124	129	anti-parallel
Strand 8	B	34	39	anti-parallel
Strand 9	B	67	73	parallel
Strand 10	B	100	102	parallel
Strand 11	B	13	17	anti-parallel
Strand 12	B	22	26	anti-parallel

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There are 7 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	102	first strand
Strand 2	A	67	73	parallel
Strand 3	A	34	39	parallel
Strand 4	A	125	129	anti-parallel
Strand 5	A	135	140	anti-parallel
Strand 6	B	134	141	anti-parallel
Strand 7	B	7	8	parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	116	first strand
Strand 2	A	121	122	anti-parallel

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There are 14 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	21	26	first strand
Strand 2	C	13	18	anti-parallel
Strand 3	C	100	102	anti-parallel
Strand 4	C	68	73	parallel
Strand 5	C	35	39	parallel
Strand 6	C	125	129	anti-parallel
Strand 7	C	135	140	anti-parallel
Strand 8	D	135	140	anti-parallel
Strand 9	D	125	129	anti-parallel
Strand 10	D	34	39	anti-parallel
Strand 11	D	67	74	parallel
Strand 12	D	100	103	parallel
Strand 13	D	14	18	anti-parallel
Strand 14	D	21	25	anti-parallel

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There are 11 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	22	24	first strand
Strand 2	E	15	17	anti-parallel
Strand 3	E	100	102	anti-parallel
Strand 4	E	67	73	parallel
Strand 5	E	34	39	parallel
Strand 6	E	125	129	anti-parallel
Strand 7	E	135	140	anti-parallel
Strand 8	F	135	140	anti-parallel
Strand 9	F	126	129	anti-parallel
Strand 10	F	34	39	anti-parallel
Strand 11	F	67	72	parallel

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There are 3 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	22	25	first strand
Strand 2	F	14	17	anti-parallel
Strand 3	F	100	101	anti-parallel

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There are 10 strands in GA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	7	8	first strand
Strand 2	G	134	135	parallel
Strand 3	G	125	130	parallel
Strand 4	G	138	140	anti-parallel
Strand 5	H	135	140	anti-parallel
Strand 6	H	125	129	anti-parallel
Strand 7	H	35	39	anti-parallel
Strand 8	H	68	73	parallel
Strand 9	H	100	102	parallel
Strand 10	H	15	17	anti-parallel

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There are 8 strands in GB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	7	8	first strand
Strand 2	G	134	135	parallel
Strand 3	G	125	130	parallel
Strand 4	G	34	38	anti-parallel
Strand 5	G	67	73	parallel
Strand 6	G	100	102	parallel
Strand 7	G	13	18	anti-parallel
Strand 8	G	21	26	anti-parallel

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There are 14 strands in IA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	21	24	first strand
Strand 2	I	15	18	anti-parallel
Strand 3	I	100	102	anti-parallel
Strand 4	I	67	73	parallel
Strand 5	I	34	38	parallel
Strand 6	I	125	129	anti-parallel
Strand 7	I	135	140	anti-parallel
Strand 8	J	134	141	anti-parallel
Strand 9	J	126	129	anti-parallel
Strand 10	J	34	38	anti-parallel
Strand 11	J	67	73	parallel
Strand 12	J	100	102	parallel
Strand 13	J	13	18	anti-parallel
Strand 14	J	21	26	anti-parallel

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There are 9 strands in IB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	21	24	first strand
Strand 2	I	15	18	anti-parallel
Strand 3	I	100	102	anti-parallel
Strand 4	I	67	73	parallel
Strand 5	I	34	38	parallel
Strand 6	I	125	129	anti-parallel
Strand 7	I	135	140	anti-parallel
Strand 8	J	134	141	anti-parallel
Strand 9	J	7	8	anti-parallel

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There are 2 strands in JA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	115	116	first strand
Strand 2	J	121	122	anti-parallel

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There are 9 strands in KA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	21	26	first strand
Strand 2	K	13	18	anti-parallel
Strand 3	K	100	102	anti-parallel
Strand 4	K	67	73	parallel
Strand 5	K	34	38	parallel
Strand 6	K	125	129	anti-parallel
Strand 7	K	135	140	anti-parallel
Strand 8	L	135	141	anti-parallel
Strand 9	L	124	129	anti-parallel

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There are 5 strands in LA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	21	26	first strand
Strand 2	L	13	18	anti-parallel
Strand 3	L	100	102	anti-parallel
Strand 4	L	67	73	parallel
Strand 5	L	34	38	parallel

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There are 12 strands in MA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	24	26	first strand
Strand 2	M	13	17	anti-parallel
Strand 3	M	100	102	anti-parallel
Strand 4	M	67	73	parallel
Strand 5	M	34	38	parallel
Strand 6	M	124	129	anti-parallel
Strand 7	M	135	141	anti-parallel
Strand 8	N	135	141	anti-parallel
Strand 9	N	124	129	anti-parallel
Strand 10	N	34	38	anti-parallel
Strand 11	N	67	73	parallel
Strand 12	N	100	102	parallel

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There are 2 strands in NA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	13	18	first strand
Strand 2	N	21	26	anti-parallel

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There are 12 strands in OA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	21	26	first strand
Strand 2	O	13	18	anti-parallel
Strand 3	O	100	101	anti-parallel
Strand 4	O	67	72	parallel
Strand 5	O	34	39	parallel
Strand 6	O	126	130	anti-parallel
Strand 7	O	134	140	anti-parallel
Strand 8	P	135	141	anti-parallel
Strand 9	P	124	129	anti-parallel
Strand 10	P	34	40	anti-parallel
Strand 11	P	67	73	parallel
Strand 12	P	100	102	parallel

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There are 2 strands in OB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	115	116	first strand
Strand 2	O	121	122	anti-parallel

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There are 2 strands in PA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	13	18	first strand
Strand 2	P	21	26	anti-parallel

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There are 14 strands in QA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	22	26	first strand
Strand 2	Q	13	17	anti-parallel
Strand 3	Q	100	102	anti-parallel
Strand 4	Q	67	73	parallel
Strand 5	Q	34	40	parallel
Strand 6	Q	126	129	anti-parallel
Strand 7	Q	135	140	anti-parallel
Strand 8	R	135	140	anti-parallel
Strand 9	R	125	129	anti-parallel
Strand 10	R	34	38	anti-parallel
Strand 11	R	67	73	parallel
Strand 12	R	100	102	parallel
Strand 13	R	13	18	anti-parallel
Strand 14	R	21	26	anti-parallel

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There are 2 strands in QB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	115	116	first strand
Strand 2	Q	121	122	anti-parallel

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There are 2 strands in SA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	7	8	first strand
Strand 2	S	134	140	anti-parallel

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There are 14 strands in SB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	21	25	first strand
Strand 2	S	14	18	anti-parallel
Strand 3	S	100	102	anti-parallel
Strand 4	S	67	73	parallel
Strand 5	S	34	39	parallel
Strand 6	S	125	129	anti-parallel
Strand 7	S	134	140	anti-parallel
Strand 8	T	134	141	anti-parallel
Strand 9	T	124	129	anti-parallel
Strand 10	T	34	39	anti-parallel
Strand 11	T	67	73	parallel
Strand 12	T	100	102	parallel
Strand 13	T	14	18	anti-parallel
Strand 14	T	21	25	anti-parallel

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There are 8 strands in SC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	21	25	first strand
Strand 2	S	14	18	anti-parallel
Strand 3	S	100	102	anti-parallel
Strand 4	S	67	73	parallel
Strand 5	S	34	39	parallel
Strand 6	S	125	129	anti-parallel
Strand 7	S	134	140	anti-parallel
Strand 8	S	7	8	anti-parallel

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There are 2 strands in TA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	7	8	first strand
Strand 2	T	134	141	parallel

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There are 9 strands in SD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	21	25	first strand
Strand 2	S	14	18	anti-parallel
Strand 3	S	100	102	anti-parallel
Strand 4	S	67	73	parallel
Strand 5	S	34	39	parallel
Strand 6	S	125	129	anti-parallel
Strand 7	S	134	140	anti-parallel
Strand 8	T	134	141	anti-parallel
Strand 9	T	7	8	parallel

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There are 2 strands in SE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	115	116	first strand
Strand 2	S	121	122	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3ZVJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
3ZVJ