Analysis of interatomic Contacts of Structural Units in PDB entry:
3ZYN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3ZYN entry

There are 2 chains in PDB entry 3ZYN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 57GLY 366
B
 THR 55GLY 366
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 13 helices in PDB entry 3ZYN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
152 156Right-handed 310
Helix 2
2
A
318 320Right-handed 310
Helix 3
3
A
321 332Right-handed alpha
Helix 4
4
A
353 356Right-handed 310
Helix 5
5
A
357 361Right-handed 310
Helix 6
6
B
67 69Right-handed 310
Helix 7
7
B
152 156Right-handed 310
Helix 8
8
B
247 252Right-handed 310
Helix 9
9
B
318 320Right-handed 310
Helix 10
10
B
321 332Right-handed alpha
Helix 11
11
B
345 349Right-handed 310
Helix 12
12
B
353 356Right-handed 310
Helix 13
13
B
357 361Right-handed 310
Back to top of page

There are 10 sheets in PDB entry 3ZYN. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC, BD, BE,

There are 12 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 65first strand
Strand 2
A
71 73anti-parallel
Strand 3
A
92 94parallel
Strand 4
A
116 118parallel
Strand 5
A
140 142parallel
Strand 6
A
164 166parallel
Strand 7
A
188 190parallel
Strand 8
A
213 215parallel
Strand 9
A
235 237parallel
Strand 10
A
259 261parallel
Strand 11
A
283 285parallel
Strand 12
A
307 309parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 103first strand
Strand 2
A
126 127parallel
Back to list of sheets
Back to top of page

There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 175first strand
Strand 2
A
199 200parallel
Back to list of sheets
Back to top of page

There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
245 246first strand
Strand 2
A
269 270parallel
Back to list of sheets
Back to top of page

There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
315 316first strand
Strand 2
A
342 344parallel
Back to list of sheets
Back to top of page

There are 12 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 65first strand
Strand 2
B
71 73anti-parallel
Strand 3
B
92 94parallel
Strand 4
B
116 118parallel
Strand 5
B
140 142parallel
Strand 6
B
164 166parallel
Strand 7
B
188 190parallel
Strand 8
B
213 215parallel
Strand 9
B
235 237parallel
Strand 10
B
259 261parallel
Strand 11
B
283 285parallel
Strand 12
B
307 309parallel
Back to list of sheets
Back to top of page

There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
102 103first strand
Strand 2
B
126 127parallel
Back to list of sheets
Back to top of page

There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
174 175first strand
Strand 2
B
199 200parallel
Back to list of sheets
Back to top of page

There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
245 246first strand
Strand 2
B
269 270parallel
Back to list of sheets
Back to top of page

There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
315 316first strand
Strand 2
B
342 344parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il