Analysis of interatomic Contacts of Structural Units in PDB entry:
3ZYO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3ZYO entry

There is 1 chain in PDB entry 3ZYO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 58ASN 454
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 3ZYO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
247 252Right-handed alpha
Helix 2
2
A
318 320Right-handed 310
Helix 3
3
A
321 332Right-handed alpha
Helix 4
4
A
345 349Right-handed 310
Helix 5
5
A
353 356Right-handed 310
Helix 6
6
A
357 361Right-handed 310
Helix 7
7
A
429 433Right-handed 310
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There are 9 sheets in PDB entry 3ZYO. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 66first strand
Strand 2
A
71 73anti-parallel
Strand 3
A
92 94parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 103first strand
Strand 2
A
126 127parallel
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There are 9 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 118first strand
Strand 2
A
140 142parallel
Strand 3
A
164 166parallel
Strand 4
A
188 190parallel
Strand 5
A
213 215parallel
Strand 6
A
235 237parallel
Strand 7
A
259 261parallel
Strand 8
A
283 285parallel
Strand 9
A
307 309parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 175first strand
Strand 2
A
199 200parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
245 246first strand
Strand 2
A
269 270parallel
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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
315 316first strand
Strand 2
A
342 344parallel
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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
367 370first strand
Strand 2
A
388 390anti-parallel
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There are 3 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
383 385first strand
Strand 2
A
423 425anti-parallel
Strand 3
A
416 417anti-parallel
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There are 4 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
405 406first strand
Strand 2
A
395 399anti-parallel
Strand 3
A
434 441anti-parallel
Strand 4
A
446 453anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il