Analysis of interatomic Contacts of Structural Units in PDB entry:
3ZYP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3ZYP entry

There is 1 chain in PDB entry 3ZYP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 2GLY 218
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 3ZYP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
49 54Right-handed 310
Helix 2
2
A
92 95Right-handed 310
Helix 3
3
A
123 130Right-handed alpha
Helix 4
4
A
161 164Right-handed 310
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There are 4 sheets in PDB entry 3ZYP. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 4first strand
Strand 2
A
202 211parallel
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There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 31first strand
Strand 2
A
41 45anti-parallel
Strand 3
A
202 211anti-parallel
Strand 4
A
67 75anti-parallel
Strand 5
A
139 145anti-parallel
Strand 6
A
151 155anti-parallel
Strand 7
A
158 159anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 31first strand
Strand 2
A
41 45anti-parallel
Strand 3
A
202 211anti-parallel
Strand 4
A
2 4parallel
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There are 7 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 18first strand
Strand 2
A
55 59anti-parallel
Strand 3
A
189 194anti-parallel
Strand 4
A
84 90anti-parallel
Strand 5
A
98 104anti-parallel
Strand 6
A
107 112anti-parallel
Strand 7
A
118 119anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il