Analysis of interatomic Contacts of Structural Units in PDB entry:
3ZYS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3ZYS entry

There are 6 chains in PDB entry 3ZYS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 5THR 748
B
 ASP 367THR 636
C
 ILE 10VAL 122
D
 SER 5THR 748
E
 GLU 366ARG 633
F
 ILE 10VAL 122
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 3ZYS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 24Right-handed alpha
Helix 2
2
A
43 53Right-handed alpha
Helix 3
3
A
93 110Right-handed alpha
Helix 4
4
A
151 165Right-handed alpha
Helix 5
5
A
180 183Right-handed 310
Helix 6
6
A
184 194Right-handed alpha
Helix 7
7
A
206 210Right-handed 310
Helix 8
8
A
216 221Right-handed alpha
Helix 9
9
A
238 245Right-handed alpha
Helix 10
10
A
247 262Right-handed alpha
Helix 11
11
A
265 272Right-handed 310
Helix 12
12
A
273 310Right-handed alpha
Helix 13
13
A
729 748Right-handed alpha
Helix 14
14
B
367 391Right-handed alpha
Helix 15
15
B
402 434Right-handed alpha
Helix 16
16
B
451 464Right-handed alpha
Helix 17
17
B
465 492Right-handed alpha
Helix 18
18
B
495 529Right-handed alpha
Helix 19
19
B
577 603Right-handed alpha
Helix 20
20
B
605 617Right-handed alpha
Helix 21
21
B
618 621Right-handed 310
Helix 22
22
B
622 624Right-handed 310
Helix 23
23
B
625 630Right-handed alpha
Helix 24
24
B
632 636Right-handed 310
Helix 25
25
C
24 28Right-handed 310
Helix 26
26
C
101 115Right-handed alpha
Helix 27
27
D
5 24Right-handed alpha
Helix 28
28
D
43 53Right-handed alpha
Helix 29
29
D
93 110Right-handed alpha
Helix 30
30
D
151 165Right-handed alpha
Helix 31
31
D
180 183Right-handed 310
Helix 32
32
D
184 194Right-handed alpha
Helix 33
33
D
206 210Right-handed 310
Helix 34
34
D
216 221Right-handed alpha
Helix 35
35
D
238 244Right-handed alpha
Helix 36
36
D
247 260Right-handed alpha
Helix 37
37
D
265 272Right-handed 310
Helix 38
38
D
273 310Right-handed alpha
Helix 39
39
D
729 748Right-handed alpha
Helix 40
40
E
366 391Right-handed alpha
Helix 41
41
E
402 438Right-handed alpha
Helix 42
42
E
450 464Right-handed alpha
Helix 43
43
E
465 492Right-handed alpha
Helix 44
44
E
499 528Right-handed alpha
Helix 45
45
E
573 605Right-handed alpha
Helix 46
46
E
605 618Right-handed alpha
Helix 47
47
E
619 621Right-handed 310
Helix 48
48
E
626 631Right-handed alpha
Helix 49
49
F
24 28Right-handed 310
Helix 50
50
F
101 115Right-handed alpha
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There are 4 sheets in PDB entry 3ZYS. Click on sheet of interest to get list of strands forming it: AA, CA, A, FA,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 83first strand
Strand 2
A
120 126anti-parallel
Strand 3
A
69 75parallel
Strand 4
A
133 136anti-parallel
Strand 5
A
33 37parallel
Strand 6
A
169 175parallel
Strand 7
A
200 204parallel
Strand 8
A
231 233parallel
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There are 8 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
55 58first strand
Strand 2
C
41 45anti-parallel
Strand 3
C
31 38anti-parallel
Strand 4
C
12 20anti-parallel
Strand 5
C
95 99anti-parallel
Strand 6
C
76 82anti-parallel
Strand 7
C
62 67anti-parallel
Strand 8
C
118 119parallel
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There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
80 83first strand
Strand 2
D
120 126anti-parallel
Strand 3
D
69 75parallel
Strand 4
D
133 136anti-parallel
Strand 5
D
34 38parallel
Strand 6
D
170 175parallel
Strand 7
D
202 204parallel
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There are 7 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
55 58first strand
Strand 2
F
41 45anti-parallel
Strand 3
F
31 38anti-parallel
Strand 4
F
12 20anti-parallel
Strand 5
F
95 99anti-parallel
Strand 6
F
76 82anti-parallel
Strand 7
F
62 65anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il